PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JLE70
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 463aa    MW: 50834.1 Da    PI: 6.8711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JLE70genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12397442655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Araip.JLE70 397 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKELQ 442
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16394453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-13395446No hitNo description
Gene3DG3DSA:4.10.280.105.3E-16396454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9397442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14397447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MESDLHRHPP MFLDHHHHHH HHHHHQQMNT TTTNNNSNSS GLTRFRSAPS SYFSSIIDKE  60
FYESIFNKPS SPETEKILAR FMNSLANDEP EDDSLLGVAA ATTTTNNNNN NKNLSPPQQV  120
VQQISQVKEE EISINTINTN NTLQPQPLPS SMNNESLVQQ PQQQMNSMSN NNYGSLSGNN  180
PPTQSFYQSS GRPPLPNQMK TGRGNASNLI RHGSSPAGFF SNLNIEGYAA LRGMGTMGAA  240
ASNTSEDANF SPVARLKNPP TFSSSGLMTP IAEIRSTSNT INNPESAEAF AESQSSDFMS  300
GLTVGSWDDS SSSMMSDNIA GRKRFRDEDV KPFAGANVAD TQVKTEAGQA PGAPLAHQLS  360
MPNTSSEIAA IEKFLQCSDS VVCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQDLVPN  420
MDKQTNTADM LDLAVDYIKE LQNQVETLSD SQAKCTCAHK KQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JLE70
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311188e-97KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187162.10.0transcription factor bHLH122
RefseqXP_020973564.10.0transcription factor bHLH122
RefseqXP_025642124.10.0transcription factor bHLH122
RefseqXP_025642125.10.0transcription factor bHLH122
TrEMBLA0A445A9680.0A0A445A968_ARAHY; Uncharacterized protein
STRINGGLYMA12G05930.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-53bHLH family protein