PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JH5QN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 855aa    MW: 92692.8 Da    PI: 5.4045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JH5QNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-1085112127
                  --S---SGGGGTS.--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                  +kt+lC++f+r G  C++G  C+FaHg+
  Araip.JH5QN  85 WKTSLCSYFRRHGnSCSHGTACRFAHGE 112
                  8*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-1381116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.53E-782117IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-584112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51184113IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-885112IPR000571Zinc finger, CCCH-type
CDDcd005904.94E-6178243No hitNo description
Gene3DG3DSA:3.30.70.3302.9E-6181243IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.31E-6181252IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.09304855IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533359.47E-9306332IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533359.47E-9364457IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1509.8E-64557657IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.03E-34557657IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.9E-9601659IPR025714Methyltransferase domain
CDDcd024404.07E-6603657No hitNo description
Gene3DG3DSA:3.40.50.1509.8E-64737794IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.0E-8742790IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.03E-34742804IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300750782IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1509.8E-64830855IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.03E-34839855IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MEETNTELSP SKTLSPTNGQ DSIIQSNLTA TNEPETHTEN QIPEAEHQSD VVAGEKRKRD  60
DDEAGESVDG GSGASGEDRS LHPLWKTSLC SYFRRHGNSC SHGTACRFAH GEEELRIRPD  120
NTWDPTSERA KKALKSENGE RCGVSEEVMM TEAVVDDDDG GDEENGGSGG SNHALSKCLV  180
HLPRKWCSDN LRSFLNDAGI RFKHAKKKKG MMVGFVSFED EEQMQSSSKD LEGKSIGNKR  240
LKVADVIPRS FEKNSNSNAG SVATLNEENA GVDVDPNVTV EAGANSDNLA ANGSLSKTKS  300
LRDVVTPLAH MAYADQLEQK KNSIMQMLKK LTRNARKACP NGVSFPDWIV KSREIGGLPC  360
NLEGIIASPI VNGYRNKCEF SVGYSLEGKV TVGFMLGNFR EGVTAVEEAV DCPNVSTIAG  420
KYATIFQEFL QQSDLPVWNR FKNSGFWRQL TVREGRTNGN VADADSFGGI AEVMLIVQVS  480
TAGFDDTKVS GEFKRLAQAF AVGATSHGPT LPLTALVVQD HQGISNVAPA DAPLRLLPIR  540
KTGDLEMDEN ADAMDVRIHD YISNLRFSIS PTAFFQVNSL AAEKLYSLAG DWACLGPDTL  600
LFDICCGTGT IGLTLAHRVG MVVGIEMNAS AVADAHRNAE INGIKNCKFI CSKAEDVMGS  660
LLKEYLNVPK EQVDDPKIAE SSNDISKCGD LQEPENGEMA SQSSENSNGE VGSEVQNCSG  720
SENGNTSAQN SSEGANTSAQ HFKNVVAIVD PPRAGLHPTV LKVLRTHSRL RRLVYISCNP  780
ETLVANAIEL CTPSPIKMEK GNKDNRGWRN MSSAGLARHR AKSMPISEAF HPVKAMAVDL  840
FPHTQHCELV MLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5xj2_A2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5xj2_B2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5xj2_C2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5xj2_D2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-17559677263385Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5zq8_A2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5zq8_B2e-17559677262384Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-17559677263385Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JH5QN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187410.10.0zinc finger CCCH domain-containing protein 24
RefseqXP_025641809.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A445E4I20.0A0A445E4I2_ARAHY; Uncharacterized protein
STRINGGLYMA12G07300.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]