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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.JAE3N | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 108aa MW: 12438.1 Da PI: 5.9139 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.4 | 5.5e-09 | 63 | 104 | 1 | 44 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ Araip.JAE3N 63 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSK 104 6***************998776..8889***********98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-6 | 63 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MFFVYFELVL KIMDHSTSDS QLNPGEVDYE FESNEVPEPL SVVDDELVPK VRMTFTTLED 60 AGKFYRNYAK AAGFSTRVRC TNRKGNEIKN QLITCSREGK WKSKISLT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.JAE3N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 8e-72 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020992539.1 | 3e-64 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445C8R3 | 3e-62 | A0A445C8R3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |