PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.J93FI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 294aa MW: 33464.6 Da PI: 8.816 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.1 | 1.8e-32 | 54 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ + +W+ Araip.J93FI 54 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadgsETRWH 149 799***********9.99*****99984443333332222333336**********.555555677******************744446555788** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v+ +g+l+g kk+Lv+y ++++k+ekt+Wvmh+y+l Araip.J93FI 150 KTGKTRPVYI-SGKLKGYKKILVLYtnYKKQRKPEKTNWVMHQYHL 194 **********.999***********5435888899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-37 | 49 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.398 | 54 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 55 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTQCNSNDYP ENNHNTIVER NKDILISRTC PSCGHHIKCQ QDHQGAGIHD LPGLPAGVKF 60 DPTDQEILEH LEAKVRSDIH KLHPLIDEFI PTLEGENGIC CTHPEKLPGV GKDGLIRHFF 120 HRPSKAYTTG TRKRRKVHTD ADGSETRWHK TGKTRPVYIS GKLKGYKKIL VLYTNYKKQR 180 KPEKTNWVMH QYHLGNNEEE KEGELVVSKV FYQTQPRQCA GSLLIKDSSS FPAKLKDQSG 240 VHHHEVTNNH KNNGFVEYYN ASFISFAQGE QQHRSNNPTL ISHFPAHDGA PFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.J93FI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016171970.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_020964526.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_020964527.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_025671310.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-115 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A444Y625 | 0.0 | A0A444Y625_ARAHY; Uncharacterized protein | ||||
STRING | XP_004487194.1 | 1e-166 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-105 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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