PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J914T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 477aa    MW: 54621.9 Da    PI: 9.1131
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J914TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1862148191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+ +p
  Araip.J914T  62 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQVITCSREGKWKSKISP---TKKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPYCP 148
                  6****************98887..888**************998877...999***************998879**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1662148IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186264300IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4266297IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4275302IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MKLKFELILK IMDDSTSDCQ LNQGEVDYEF ESNEVPEPLS VVDDQFVPKV GMTFTTLEDA  60
GKFYRNYAKA AGFSTRVRST NRKGNEIKNQ VITCSREGKW KSKISPTKKT NPTAGLNCPA  120
RIYIHTLKDV GAWIISKVVL DHSHPYCPNL YEDRHIWVPI YLDHHFWAGM RSTQRSESMH  180
SFFNNREQAE RKSDAANFHT VIPCATKSSI ETQFQDVYTH QKFREVQAQF REKANCITRL  240
TNSALGYSVY EVGEQVSSSI FNKFVVTYDS VAAEVKCQCL LFESRGILCR HALSVLSFEQ  300
VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLLEPRSKRF DQLVFRSQNI CEFASESEEL  360
TTILYRVYDN VMAEMESLKA KRKGTSSLSH EDANLESVNE LQSPPRIRTR GRPENRLGSK  420
LDKQIANATK KKKMKVLSEI NLFDAASVVH SNSSQYQGHV MNYQFRVPGA GDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J914T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-26far-red elongated hypocotyls 3