PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J4347
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 798aa    MW: 89753.7 Da    PI: 9.1954
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J4347genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.31e-1713102190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++YA +  F vr ++ ++   +g i++r+ vC++ g+r+ee +k+e+ r +r+ tr  C  +++ ++++  +kw+v ++ +eH+H l+
  Araip.J4347  13 RFYKTYAIMHDFAVRLDEVRRD-SDGCIIMRQIVCNRAGSRKEEVEKDERIRDHRPLTRSCCWVRIRARLDRkIHKWKVVSFYEEHSHGLV 102
                  5****************99998.8999********************9**********************9989**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1413102IPR004330FAR1 DNA binding domain
SuperFamilySSF577562.93E-6383418IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-4390412IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.488395412IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-4448454IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MQLQFTDEEA VYRFYKTYAI MHDFAVRLDE VRRDSDGCII MRQIVCNRAG SRKEEVEKDE  60
RIRDHRPLTR SCCWVRIRAR LDRKIHKWKV VSFYEEHSHG LVDPLNVSMM PEYRTFSVSD  120
KAQAKNLDDI GIRTCHILGY LAAQKAYVRK KDTLLEFINN METVVSHYRN NERVAEFNSK  180
YTDPVLVTSL PTLEDFAAKT FTRNMFREVR KEIEGAYAMN TELVIQDGGK LYFKCNSFGV  240
PEIDHVIEFD KVGGMLRCEC LWFENRGIPY MHIFACLKHQ HIEVIPEHLV CKHWTKNAKS  300
DFMKSNVDDP SDSDKVLKCR LGVLGAECSR LMDVASKNSS DFVEAMNDVV NTITKLQKQG  360
ENPRNSNLDD DYVVDPLVVK SKGAPKKNSK FKQRRRCSNC GVTGHYNKSC PNVLGRIPKE  420
PVDDDTEKNI SSHLDILTKG TAEEKERKRK GSCSRPAPAP VPCRAAVEPT EQKPIAAHHR  480
HVADEEERAS SAEEASKIRC CPAVPSSPSP SRVRSETREQ AAKEEGTAPS VESIRVAART  540
LVVAAAVGRR REEKDAMYIA AHCRASSPPL PWTPMSCTVS SGFDEEGPWI GVFQNQVVGF  600
LELLFCHHRC CSRASIARKR RRCCRRTTVE AATVLLPPPL EVATGAAAET PVFLILRCGY  660
LRFGFRYLCV EIKVATEPSE LPAAIRAAVR EAARALPPRQ FPAAPPSSPL SRSPSPRTTA  720
TSPTKRRERA ASRRLRRSAA VQPMPSSPSP SRVRSEAREQ AAKEEGTAPS VESIRVAART  780
LVVAAAVGRR REEKMRCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1617621RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J4347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020972700.10.0uncharacterized protein LOC110269299
TrEMBLA0A445AG210.0A0A445AG21_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-13FAR1-related sequence 3