PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J2WDJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 434aa    MW: 50933.3 Da    PI: 9.4919
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J2WDJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.34.5e-171197191
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 kfY++Y+k +GFs++++++++    ++i+++  vC++eg+ +++ +    + +t+++   +C a++ v+ +k  g+w ++k++l+H+H+++p
  Araip.J2WDJ 11 KFYKRYSKLAGFSTKIRNTTRD--GDKIKNKLIVCTREGRWKSKISP---TLKTNPSAGLNCPARIYVHIMKdVGVWTISKVVLNHSHPCCP 97
                 6****************98777..8889************9998777...999******************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-141197IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.419270306IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MIFETLEEAA KFYKRYSKLA GFSTKIRNTT RDGDKIKNKL IVCTREGRWK SKISPTLKTN  60
PSAGLNCPAR IYVHIMKDVG VWTISKVVLN HSHPCCPERV EMLKQHRELS MFVRRTIEIH  120
EKAGIRPSKT YQSFVAAAGS HRELVYLDHH FWAGMRSTQR SESMHLFFNK FITRNSSLRQ  180
FVKQYDNCLA SREQIEREFD VAYFYTVIPC ATKSAIGAQF QHVYTHEKFM EVQAQFRGKV  240
NCITRSMHST LGFTTYEVIE QVFNSTFNKF FITYDAVSRE VKCQCLLFES RGILCHHSIS  300
ILSFDRVDNM TLKYILERWS KNIKRRHTHI KSSQDEPLLE PRSKRFDELV FQSHNICEFE  360
SESEELTRIL HWEFDKVMAE MQEYKERSKG KSSLCHEKAT LSDVNELQSP HVSKQEAGSR  420
TDLDQTWKKR SQMP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J2WDJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020968430.10.0protein FAR1-RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A445B0360.0A0A445B036_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-25far-red elongated hypocotyls 3