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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.IU4B8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CPP | ||||||||
Protein Properties | Length: 622aa MW: 69143.1 Da PI: 5.8187 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.2 | 2.1e-15 | 422 | 461 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCkkskClk+YCeCfaa+++C+ +C+C++C+Nk + Araip.IU4B8 422 DCKRCNCKKSKCLKLYCECFAARTYCTGNCSCKNCHNKLD 461 689**********************************976 PP | |||||||
2 | TCR | 50 | 5.8e-16 | 503 | 542 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks C+kkYCeCf+ag Cs +C+C+ CkN+ Araip.IU4B8 503 RHKRGCNCKKSLCQKKYCECFQAGIGCSMNCRCDACKNTF 542 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.2E-15 | 421 | 462 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.028 | 422 | 543 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.4E-11 | 424 | 459 | IPR005172 | CRC domain |
SMART | SM01114 | 3.8E-15 | 503 | 544 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.4E-11 | 505 | 541 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MVMGTPERNQ INPSLSRVQD SPVFNFINGL SPIKPEKPDQ IGQTFSSLSF PSPPRAFASP 60 NLTSFKESKV LKRHNPFGKS RPGVSSEDGN KFQTSDEAIA DSCHPYHNSR ESQGNFHDGI 120 SAVDDSIALP GEHTDFSAEI PQALKYNNWG NPGYDPGHVD NSLDSIEVLN QELVRFDPKG 180 QESEHCDNLI SGDTDFFVFN SPNEAAAFKD IMQKPDSHLM SLIPESSIYN GLRDDSKAKI 240 EEYHPEPLAV IDQMQDKHYV AITSNTKDKA NVEFVSVMNG SKRRRCLDFE TANVQRKNSD 300 HNLKFDSLVH SNEKQLVAAK CNSSSQQCTM PAVGLDLNAL AALKGGKKVI SNDNWSCGIH 360 VNLPSCTSLQ IYNSHEYQDP LAMEVDLSDI GPQPIEDSSY ASDFTVDEDV NQNSPQKKRH 420 GDCKRCNCKK SKCLKLYCEC FAARTYCTGN CSCKNCHNKL DHREEVLQAR KQIESRNPLA 480 FTPKVISEPE IGNDPNKTPA PSRHKRGCNC KKSLCQKKYC ECFQAGIGCS MNCRCDACKN 540 TFGRKDGVET QPEVEIEACD KEVVESSLQK IEIQNFDGVS SSLNFLSEEK IFGTLCSQPF 600 EHSQAVSDQE MIDIFGERGR SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-17 | 424 | 540 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-17 | 424 | 540 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.IU4B8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020978940.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
TrEMBL | A0A444Z7R6 | 0.0 | A0A444Z7R6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G00920.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 3e-80 | TESMIN/TSO1-like CXC 2 |