PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IN98T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 827aa    MW: 94976.2 Da    PI: 9.1422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IN98TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.4e-133711516100
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    lpk+f +++g +   +k + l+ ++g +W+v    + ++  +v+++GWkeFvk   ++ g ++ F+++g+s+    v++++ks
  Araip.IN98T  37 KKLPKNFSRKYGAS--LPKPVFLKPPNGTEWKVDW--TMHDADVVFENGWKEFVKYYSINHGYVLKFEYNGNSKL--GVQICDKS 115
                  579********977..6677***************..********************************997665..89999985 PP
2B330.75.4e-10223302183
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  ff + +++  l ++r  +p +f++++ ++k +     +   + + W +kl  y  k++++ l++GW+ F+ka +L++gD+++F+
  Araip.IN98T 223 FFIINVTKKFLDQSRPNVPIDFVKKYLKQK-Q---FAMVRFRDKLWPLKLlPYVTKKESIRLSTGWNLFAKASELQAGDSLMFT 302
                  66777888888999999*********6453.3...55666666*******555888889************************9 PP
3B348.21.9e-15353442298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  fk+   s +l+ g l +p++f++++g     s  + l+ ++g +W+v+   +k++++++l+ GW+eF+    L+ g  + F+++++s+f   v++++
  Araip.IN98T 353 FKII-LSTALEDGKLKIPNSFTKKYGDG--LSNPVFLKPPDGTEWKVEW--TKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQF--EVQICE 442
                  4443.488899999***********755..6667***************..********************************998999..898886 PP
4B353.25.2e-17571656195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f  +++ps++ + + + +p kf++++ +k   + t +le    gr+W v++  + ++    +++GWk+F+k+n L++gD++vF+l++ ++  ++v+
  Araip.IN98T 571 FMVIMKPSYAKSYS-MNIPSKFTAKYLKK---QATAILEVhDGGRTWAVTY--SFGK----FSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVS 656
                  56677777777776.***********544...235666662466*******..5555....789********************987677755555 PP
5B345.91e-14730824198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ff v ++++ l+++r ++p  f+++h +k +    ++       +W++kl +y+++++ ++l++GW+ F++  +Lk+gD+++F+l++++++ + v++f
  Araip.IN98T 730 FFMVIIKPSFLRQRRPSIPAFFIRNHLKK-TH---IVTFKFGETRWRIKLlRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAVFDVHLF 823
                  78889999***************888533.33...4444457799****9777999999***************************999998888887 PP

                  - CS
           B3  98 r 98 
                  r
  Araip.IN98T 824 R 824
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.19622115IPR003340B3 DNA binding domain
SMARTSM010195.2E-827115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1632115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-1635116IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-1137114IPR003340B3 DNA binding domain
CDDcd100173.91E-1239113No hitNo description
Gene3DG3DSA:2.40.330.101.5E-12216303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-11217303IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-9222302No hitNo description
SMARTSM010190.012223316IPR003340B3 DNA binding domain
PfamPF023621.2E-7223302IPR003340B3 DNA binding domain
PROSITE profilePS508639.925223323IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-19346443IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19348442IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-13351441No hitNo description
PROSITE profilePS5086313.281351444IPR003340B3 DNA binding domain
SMARTSM010191.1E-14352444IPR003340B3 DNA binding domain
PfamPF023624.9E-13353442IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-21563659IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20566664IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-19569659No hitNo description
PROSITE profilePS5086313.14570661IPR003340B3 DNA binding domain
SMARTSM010198.7E-18571661IPR003340B3 DNA binding domain
PfamPF023622.9E-14571657IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-17723824IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-16724825IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-14729824No hitNo description
PROSITE profilePS5086312.041730826IPR003340B3 DNA binding domain
SMARTSM010193.9E-9730826IPR003340B3 DNA binding domain
PfamPF023623.3E-12730824IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
IPNPESVLVK AEVPIIHLLK GPSHHSLSTI TQLNSYKKLP KNFSRKYGAS LPKPVFLKPP  60
NGTEWKVDWT MHDADVVFEN GWKEFVKYYS INHGYVLKFE YNGNSKLGVQ ICDKSGLEIE  120
YPVNVNQQEK VNIIEISDEE VQAFDEMPQR QNNRRKSPKS QLNQRNGNQS QGTSFLKSTS  180
TSIEKELDGD RKETQTTSKV KSPLAETSGT LKEAEKFTSK NPFFIINVTK KFLDQSRPNV  240
PIDFVKKYLK QKQFAMVRFR DKLWPLKLLP YVTKKESIRL STGWNLFAKA SELQAGDSLM  300
FTSLDVTPKQ SIWDSAMSIL HYNIGEPEKL RKMTEEDQAT PPPMNNSNAV LFFKIILSTA  360
LEDGKLKIPN SFTKKYGDGL SNPVFLKPPD GTEWKVEWTK QDDGIFLEHG WNEFAMYYSL  420
DHGHLLFFEY KNTSQFEVQI CEVSGLEIDY PFHVIQQENE NIEQINHEAD QVFDDMPQSQ  480
NNRMKSPMSY PQPSNTTREV RTSCSLQNLP LIHQINGNEC QGTSFDESTF ASIKKELDED  540
IGGSTPCPRV ERLKQTLNKA TTSKSRQNPS FMVIMKPSYA KSYSMNIPSK FTAKYLKKQA  600
TAILEVHDGG RTWAVTYSFG KFSSGWKRFA KDNSLNVGDI CVFELTNPKD LYFKVSITRI  660
EEEELPLSQV EGDRVNCLEP AKVNYVESKS DIMIKVKKET QETSLATPPG FEPNEEALKE  720
AKKFTSENPF FMVIIKPSFL RQRRPSIPAF FIRNHLKKTH IVTFKFGETR WRIKLLRYTR  780
YRSPITLSNG WSLFCRGSRL KAGDVCIFEL INKEDAVFDV HLFRCHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1355166230144B3 domain-containing transcription factor VRN1
4i1k_B8e-1355166230144B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IN98T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182111.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_029152382.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A444XAP40.0A0A444XAP4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-34B3 family protein