PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.IM1EJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 76aa MW: 9213.46 Da PI: 8.2327 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.3 | 4.1e-16 | 3 | 41 | 19 | 57 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Araip.IM1EJ 3 FGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 41 8899*********************************96 PP | |||||||
2 | HD-ZIP_I/II | 93.7 | 1.9e-30 | 2 | 68 | 17 | 83 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lkra+++ +++rLe+e Araip.IM1EJ 2 NFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLLDKCRLETE 68 69999***********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.155 | 1 | 42 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-4 | 2 | 46 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.05E-14 | 3 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-13 | 3 | 41 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.93E-10 | 3 | 43 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 3 | 49 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-6 | 13 | 22 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 17 | 40 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-6 | 22 | 38 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MNFGNEHKLE SERKDKLALE LGLDPRQVAV WFQNRRARWK NKKLEEEYSN LKRAHETTLL 60 DKCRLETEFW TTMSCD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.IM1EJ |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015964054.1 | 2e-42 | homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_016201830.1 | 2e-42 | homeobox-leucine zipper protein ATHB-40 isoform X2 | ||||
Refseq | XP_020978662.1 | 2e-42 | homeobox-leucine zipper protein ATHB-40 isoform X1 | ||||
Refseq | XP_025651862.1 | 2e-42 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 3e-34 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | V7CFD8 | 2e-37 | V7CFD8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156908.1 | 4e-38 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-36 | homeobox protein 40 |
Publications ? help Back to Top | |||
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