PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IE1YD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 289aa    MW: 32875.2 Da    PI: 8.0182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IE1YDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-11193236347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT++E+ l+v++ +  G++ W++I+++  k++t  q+ s+ qky
      Araip.IE1YD 193 RWTEDEHRLFVRGYQAEGTN-WSRISKYYVKTKTYHQITSHAQKY 236
                      9*****************99.***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0235099IPR001005SANT/Myb domain
SuperFamilySSF466895.74E-552104IPR009057Homeodomain-like
CDDcd001671.03E-45497No hitNo description
PROSITE profilePS500904.8675497IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-57598IPR009057Homeodomain-like
PROSITE profilePS5129415.613186241IPR017930Myb domain
SuperFamilySSF466891.22E-13188241IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-12189240IPR006447Myb domain, plants
SMARTSM007172.7E-5190239IPR001005SANT/Myb domain
CDDcd001678.95E-5193237No hitNo description
PfamPF002491.6E-8193236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-7193235IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDPLDMIDPW DMIDLDADRR NMVEQCAIDF LADVCGYQRP ESQLQLQPMQ PQVWTWEENK  60
AFESVIANCF QYAQHNIAAR LPGKTPAQLQ ERFKKLMKDI NVIHNGYTAN TPLNAAASEN  120
MTMTMAAPAT TLEHNPVSIP IINATTTTPP PPPYNTDHHH HGAELVAAAA PMEAATREQN  180
QSVNTNNTKK YSRWTEDEHR LFVRGYQAEG TNWSRISKYY VKTKTYHQIT SHAQKYFIHK  240
KGLARGEKLR KSIYDGVVVS EEGKASMNCS RQQLILGKPR TNPLQYSMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IE1YD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020962879.11e-152uncharacterized protein LOC107608832 isoform X2
TrEMBLA0A444XRN41e-124A0A444XRN4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1908424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-17MYB family protein