PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.ID1ZZ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 640aa MW: 71649.7 Da PI: 5.059

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.ID1ZZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	63	85	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp Araip.ID1ZZ 63 VPCIFFQK-GLCLKGDRCAFLHGP 85 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.408	59	86	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-5	59	85	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.3E-5	60	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-4	63	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.8E-5	64	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MNCGDPGGKG NECEYRHSEY ARPLDGLLGS PAATAAGPSV PSSQIPATPA APAAPYNSTK 60 QAVPCIFFQK GLCLKGDRCA FLHGPNPTAG NKAVNQVPVS NQGTETPSLK KPFGSRDKNA 120 QERRSSQGNI PKLVGGLEIK PSLKVETAPQ RNNFELVKEK HVAPPPAGFD DEASRFKMRS 180 ISPVANGPTA ARSNRLHQVR MPDDNSFHNG KDSDEFLRES SPGFDVLVAD ELRNSDYYHG 240 EDEFGNARGP DERNLDSLND YDLGHSADYG LARDIDQERF RVPQSYDSYD HMQEPYAWEQ 300 HRKAPGHLER RSHRRSDSPD NVEVSDLRHR LSKRRRVNGL KSVVSNDFDS HGDQQSHQFS 360 SRKDSHQLPL NDRFRGRIKL PASGADDNPE RESDRGRIRS RLSTGRLPTP HQGRLQDRIK 420 GRVQDDERRN FRERSIGREA MGDRSDFSGP KSLAELKNGR SSEYKEHQSL GKRKSLREQS 480 QSEGDFQFDG PKPLSEILKE KRRVGAGVSS QSEIVHSSDD TAVTNTQNGA LPEAKEGAKN 540 HSLINEEETK LQDTDTAGRE IDNNEGNRDQ SYEDGMIYDE AAEEQEYEGD DQRDGEYDYE 600 QVDEGEYDYE QVDEGENPEQ EYMEDEDGDD FAKKIGVMTT

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MNCGDPGGKG NECEYRHSEY ARPLDGLLGS PAATAAGPSV PSSQIPATPA APAAPYNSTK  60
QAVPCIFFQK GLCLKGDRCA FLHGPNPTAG NKAVNQVPVS NQGTETPSLK KPFGSRDKNA  120
QERRSSQGNI PKLVGGLEIK PSLKVETAPQ RNNFELVKEK HVAPPPAGFD DEASRFKMRS  180
ISPVANGPTA ARSNRLHQVR MPDDNSFHNG KDSDEFLRES SPGFDVLVAD ELRNSDYYHG  240
EDEFGNARGP DERNLDSLND YDLGHSADYG LARDIDQERF RVPQSYDSYD HMQEPYAWEQ  300
HRKAPGHLER RSHRRSDSPD NVEVSDLRHR LSKRRRVNGL KSVVSNDFDS HGDQQSHQFS  360
SRKDSHQLPL NDRFRGRIKL PASGADDNPE RESDRGRIRS RLSTGRLPTP HQGRLQDRIK  420
GRVQDDERRN FRERSIGREA MGDRSDFSGP KSLAELKNGR SSEYKEHQSL GKRKSLREQS  480
QSEGDFQFDG PKPLSEILKE KRRVGAGVSS QSEIVHSSDD TAVTNTQNGA LPEAKEGAKN  540
HSLINEEETK LQDTDTAGRE IDNNEGNRDQ SYEDGMIYDE AAEEQEYEGD DQRDGEYDYE  600
QVDEGEYDYE QVDEGENPEQ EYMEDEDGDD FAKKIGVMTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	336	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.ID1ZZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016191249.1	0.0	zinc finger CCCH domain-containing protein 17
Refseq	XP_025639887.1	0.0	zinc finger CCCH domain-containing protein 17
TrEMBL	A0A445DLT5	0.0	A0A445DLT5_ARAHY; Uncharacterized protein
STRING	GLYMA05G26620.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37