PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.I7PN0

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 288aa MW: 31147.1 Da PI: 8.4023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.I7PN0	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37	9.8e-12	4	53	1	45
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkl 45 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l Araip.I7PN0 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNL 53 6*******************************************999876 PP
2	DUF260	24.6	6.9e-08	53	88	64	99
DUF260 64 eAearardPvyGavgvilklqqqleqlkaelallke 99 A+ r+ +P+yG+vg+++++++ql+q+++e++l ++ Araip.I7PN0 53 LACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGA 88 69****************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	6.7E-8	4	53	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLACGRIVN 60 PIYGSVGLLW SGSWQLCQAA VEAVLKGAPI TPITSEAAAN GRGPPLKAYD IRHVTKDDSN 120 SALSTHNPSH PLKTRSRKRS HSQPKPKTKP NAQKLTTTAT TTTTALLNVD EVVNHSASLD 180 HESSLSHQSE LVTAAEGGGE SKERESESIV SVETTAEAAS VLFRDEPESN RKRVERTDED 240 RSGLGLDLTL GFEPVSSSAR ADQVVPVKKR RFDLKDYGEM GLGLECPA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.I7PN0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016194776.1	0.0	LOB domain-containing protein 41
Refseq	XP_025650546.1	0.0	LOB domain-containing protein 41-like
Refseq	XP_025697284.1	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	9e-84	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A445D9Y8	0.0	A0A445D9Y8_ARAHY; Uncharacterized protein
STRING	XP_004489144.1	1e-119	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-80	LOB domain-containing protein 41