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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.HDW5H | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 543aa MW: 62526.2 Da PI: 9.6169 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.1 | 5.3e-17 | 51 | 137 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++k+ +ei+++ +Cske k +++ ++ +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.HDW5H 51 KFYKDYAKAAGFSTRVRSTNKK--GNEIKNQLITCSKEEKWKSKISS---TEKTNPTVGLNCPARIYIHTLKdVGAWIISKVVLHHSHHCCP 137 6****************98887..8889***********99998877...8999**************998879**************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-14 | 51 | 137 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 8.803 | 296 | 332 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDDSTSNCQL NHGEVNFEFE SNEVPEPLFV VDDHLVPNVG MTFKTLEDAT KFYKDYAKAA 60 GFSTRVRSTN KKGNEIKNQL ITCSKEEKWK SKISSTEKTN PTVGLNCPAR IYIHTLKDVG 120 AWIISKVVLH HSHHCCPTQA EMLKQHRELS MSVRRIIENN EETDRHIWVP IYLDHHFWAR 180 MKSTQRSESM HSFFNKFITR NSSLIQFVKQ YDNCLGSREQ AERESDAADF HTVIPCATKS 240 SIEAQFQDVY THKKFRKVQA QFRGKTNCIT RLMNSVLGYS VYEVGEQVSS SIFNKFVVTY 300 DSVAAEVKCQ CLLFKSREIL CRHALSVLSF ERVSQVSSRY ILERLSKKVK RRHTHIKSSH 360 DEPLLEPRSK RFDELVFRSQ NICEFTLESE ELTAILHRAY DNVMVEMEAL KAKRKGTSSL 420 SHEDANLESI NKLQSPPRIR TRERPKNRLG SKLDKQITNA SKKKKTKALN ELNVFDAASV 480 VRPNSSQYQG RVMNYQFRQP AAEDNFLGPF SHRMDMSCDM GRPPITTNVV NGKQVQKSKA 540 CPH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.HDW5H |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445A1M9 | 0.0 | A0A445A1M9_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 3e-29 | far-red elongated hypocotyls 3 |