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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.H60UK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 206aa MW: 23640.8 Da PI: 5.8375 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.8 | 8.2e-14 | 131 | 200 | 1 | 70 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 +fY+ ++k GF +rk k ++g+ +kr+f C++ g re+++ + +++r++++etrt+C+akl + + Araip.H60UK 131 EFYRVFGKFHGFGIRKGDCGKD-DDGRLIKRRFFCNRAGLREHKHYNrVDRRREHKPETRTNCDAKLSIYL 200 6*****************9998.8899****************99995566777899**********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-11 | 131 | 199 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MVMKDFCFFS NSEFTRIPLL SIATTFLPLP SIDQRLPSLA AHVTVEHAAY LAWSPLQSLA 60 SAHLTITHLY GCIIYMEALS ADCTTDVNNE FEWSLEDEID DVEGLEYGDI LGLTAGDIMR 120 MVFRSDDGAY EFYRVFGKFH GFGIRKGDCG KDDDGRLIKR RFFCNRAGLR EHKHYNRVDR 180 RREHKPETRT NCDAKLSIYL DININV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | RLIKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.H60UK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020963324.1 | 7e-93 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_025668177.2 | 6e-91 | protein FAR1-RELATED SEQUENCE 5 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15343 | 2 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 3e-07 | FAR1-related sequence 10 |