PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.GV3ZT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 651aa    MW: 74469.2 Da    PI: 8.1103
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.GV3ZTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.32.5e-1848134191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++k++++   +++  +Cs+egk +++ ++   +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.GV3ZT  48 KFYKDYAKAAGFSTRVQSTNKKRNE--SKNQLITCSREGKWKSKISS---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLHHSHPCCP 134
                  6****************99998544..589999*********99887...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1548134IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.679499535IPR007527Zinc finger, SWIM-type
SMARTSM005750.0064510537IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDFEFE SNKPLSVVDE QLVPKVGMTF KTLEDADKFY KDYAKAAGFS  60
TRVQSTNKKR NESKNQLITC SREGKWKSKI SSTEKTNPTA GLNCPARIYI HTLKDVGAWI  120
ISKVVLHHSH PCCPTQAEML KQHRELSMSV RCTIENNEEA GIRPSKTFQS FVAAAGGMRS  180
TQRSESMHSF FNKFITRNSS LIQFVKQYNN CLGSREQAER ESDAADFHTV IPCATKSSIE  240
DQFQDVYTHQ KFREVQAQFR GKANYITRLT NSALGYSVYE VGEQVSSSIF NKFVVTYDSV  300
AVEPLSVVDE QLISKVGMTF KTLEDAGKFY KDYAKDDVGA WIISKVVLDH SHPCCPSKAE  360
MLKQHRELSM SIRRTIENNE EAGMKSTQRS EIMHSFFNKF ITRNSSLIQF VKQYDNCLGS  420
REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVYTHQKFRE VQTQFRGKVN CITRLTNSAL  480
GYSVYEVGEQ VSSSIFNKFV VTYDSVAAEV KCQCLLFESR WILCRHALSV LSFERVSQVS  540
SRYILERWSK KIKRRDTHIK SSHDEPLLEP RSKRFDELIF RSQNICEFAS ESEELTAILH  600
RAYDNIMVEM ESLKAKRRGH LLYLTKTPTW NPLTSFKALQ GFEQEDVQKI G
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.GV3ZT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-154protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444Z1620.0A0A444Z162_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-27far-red elongated hypocotyls 3