PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.GN10Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 297aa    MW: 33385.8 Da    PI: 6.5132
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.GN10ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072452782154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp+++++++L +++gL+ +q+ +WF N+R +
  Araip.GN10Z 245 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 278
                  469*****************************87 PP
2ELK25.53.1e-09199220122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK +L++++++++ ++++E++
  Araip.GN10Z 199 ELKIELKQGFKSRIEDVREEIL 220
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.7E-183276IPR005540KNOX1
PfamPF037902.6E-163475IPR005540KNOX1
SMARTSM012564.0E-2187142IPR005541KNOX2
PfamPF037911.5E-1690141IPR005541KNOX2
PROSITE profilePS512139.132199219IPR005539ELK domain
PROSITE profilePS5007111.71219282IPR001356Homeobox domain
SuperFamilySSF466893.17E-16221286IPR009057Homeodomain-like
SMARTSM003895.3E-11221286IPR001356Homeobox domain
CDDcd000863.61E-11222283No hitNo description
Gene3DG3DSA:1.10.10.604.1E-25226284IPR009057Homeodomain-like
PfamPF059201.1E-17239278IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMQEPSLGMM GGGGGLGGEM SSATGSGEQQ QRQLKAEIAT HPLYEQVLAA HVACLRVATP  60
IDQLPLIDAQ LSQSHHVLRS YVSQHSLSLS PHDRQDLDNF LAQYLIVLCT FKEQLQQHVR  120
VHAVEAVMAC RDIENTLQAL TGVSLGEGSG ATMSDDEDEF QMDFCLDQSS GGGGDDMMGF  180
GPLLPTESER SLMERVRQEL KIELKQGFKS RIEDVREEIL RKRRAGKLPG DTTSVLKNWW  240
QQHAKWPYPT EDDKAKLVEE TGLQLKQINN WFINQRKRNW HSNSQSVTSL KSKRKRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13222278864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275295RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.GN10Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201990.10.0homeobox protein HD1
RefseqXP_025653617.10.0homeobox protein HD1
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A444Z9300.0A0A444Z930_ARAHY; Uncharacterized protein
STRINGXP_007158449.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-160KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]