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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Araip.GI9KG |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family |
C2H2 |
| Protein Properties |
Length: 487aa MW: 53517.8 Da PI: 9.684 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Araip.GI9KG | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.2 | 2.9e-05 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Araip.GI9KG 75 FICEICNKGFQRDQNLQLHRRGH 97
89*******************88 PP
|
| 2 | zf-C2H2 | 12.8 | 0.00036 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Araip.GI9KG 151 WKCEKCSKKYAVQSDWKAHSKTC 173
58*****************9998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010075 | Biological Process | regulation of meristem growth |
| GO:0045604 | Biological Process | regulation of epidermal cell differentiation |
| GO:0048364 | Biological Process | root development |
| GO:0051302 | Biological Process | regulation of cell division |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 487 aa
Download sequence Send
to blast |
MLPGDPFSLS TSLAAAGFTQ DQNLNSIANP NPKPKPNSNP PPATNKKKRN LPGTPDPDAE 60
VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE VKKKVYICPE 120
KSCVHHEPAR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC 180
DCGTLFSRKD SFITHRAFCD ALAEESARLN SVSTSTNLSF KSEEATTQQG VLNNNVGGGV 240
GFRFDFNNEM GMVGAEQEQI MRPNLLLWLN QQHGNNRHQI NQFDMPSSSS SHHQVMHMPM 300
PMLPNDFGML APNSSKVSEE GGGSDHNSGL ASMYSENQSK QSSKAPSPST YSPMSATALL 360
QKAAQIGSTN NPSTFSASFG LMTSSSSIQT TTASNANQNQ QGRRIDQSIK QPDQCFSALM 420
HSSQSFDDQF LSNHHPGSSS AAGHNNNFTR DFLGMSRGPF LPQELAKFAS VGSSMGLTQF 480
TTSATHQ
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
| Publications
? help Back to Top |
- Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Hirano Y, et al.
Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
Nat Plants, 2017. 3: p. 17010
[PMID:28211915] - Kobayashi A,Miura S,Kozaki A
INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
Plant Mol. Biol., 2017. 94(1-2): p. 1-13
[PMID:28324206] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
Nature, 2017. 548(7665): p. 97-102
[PMID:28746306] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938]
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