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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.GCJ0X | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 265aa MW: 29460.5 Da PI: 11.0887 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 23.8 | 8.1e-08 | 45 | 86 | 4 | 50 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50
+++ r ++RR+++N ++ Lr+++P++ +K++ a ++ A+eY
Araip.GCJ0X 45 KKPRRRKQRREQLNGKYKILRSVIPSP-----TKMDRACVVGDAIEY 86
568899*********************.....8*****999999999 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.541 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.07E-7 | 45 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.8E-5 | 45 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.8E-5 | 51 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF10225 | 3.3E-9 | 216 | 248 | IPR019358 | NEMP family |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 265 aa Download sequence Send to blast |
MVSRFANNNN NNDALVPATK NINRPSMVVN VKVLKKLFSV NNYQKKPRRR KQRREQLNGK 60 YKILRSVIPS PTKMDRACVV GDAIEYNKGA AQNGLNQNLT LQLSCGFPVG KSPGSPGVAV 120 VVERVRIRGL SRFRNLSKFA HSIKVKVLPA DPNIRIPNIE ICFHRAILCV LFRNASLAIG 180 MCSQGQWEKV TKGSWIRSMS LFDHKLLDIR TASSTLASSL SKSLAFYYSS AMTIGIILVI 240 LMILYQTEHC GWGVEVAKPS TKANS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 44 | 50 | KKPRRRK |
| 2 | 46 | 50 | PRRRK |
| 3 | 47 | 54 | RRRKQRRE |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.GCJ0X |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015963802.1 | 2e-77 | uncharacterized protein LOC107487643 | ||||
| Refseq | XP_016201619.1 | 1e-77 | uncharacterized protein LOC107642693 | ||||
| Refseq | XP_025652260.1 | 1e-77 | uncharacterized protein LOC112748261 isoform X2 | ||||
| Refseq | XP_025698560.1 | 2e-77 | uncharacterized protein LOC112800476 | ||||
| TrEMBL | A0A444WU38 | 1e-78 | A0A444WU38_ARAHY; Uncharacterized protein | ||||
| TrEMBL | A0A444WU63 | 6e-78 | A0A444WU63_ARAHY; Uncharacterized protein | ||||
| STRING | XP_007156703.1 | 3e-56 | (Phaseolus vulgaris) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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