PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.G5Z1P

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 490aa MW: 56346.7 Da PI: 8.8321

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.G5Z1P	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.8	1.3e-11	51	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YA Fs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+ +H+++p Araip.G5Z1P 51 KFYRNYAW---FSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDYSHPCCP 134 69999997...***998877..8889*********998877...8999**********998879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-9	51	134	IPR004330	FAR1 DNA binding domain
SMART	SM00575	0.0028	304	331	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MDDSTSYCQL NQGEVDYEFE SNEVSEPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAWFS 60 TRVRSTNRKG NEIKNQLITC SREGKWKSKI SPTEKTNPTA GLNCPARIYI HTLKDVGAWI 120 ISKVVLDYSH PCCPSKSEML KQHRKLSMSI RRTIENNEEA DRHIWVPIYL DHHFWAGMRS 180 TQRSESMHSF FNKFITRNSS LIQFVKQYDN CLGSREQAER ESDAADFHTV IPCATKSSIE 240 AQFQDVYTHQ KFREVQAQFR GKANCITRLT NSALGYSVYE VGEQVFSSIF NKFVVTYDLV 300 AAEVKCQCLL FESRGILYRH ALSVLSFERV KRRHTHIKSS RDEPLLEPRS KRFDQLVFHS 360 QNICEFASKS EELTAILYCA YDNVMVEMES LKAKRKGTSS LSHEDANLES VNELQSPPRI 420 RTRGRPKNRL GSKLDKQITN TTKKKKTKGL NELNLFDAAS VVHSNSSEYQ GRVMNYQFRV 480 PTAADNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MDDSTSYCQL NQGEVDYEFE SNEVSEPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAWFS  60
TRVRSTNRKG NEIKNQLITC SREGKWKSKI SPTEKTNPTA GLNCPARIYI HTLKDVGAWI  120
ISKVVLDYSH PCCPSKSEML KQHRKLSMSI RRTIENNEEA DRHIWVPIYL DHHFWAGMRS  180
TQRSESMHSF FNKFITRNSS LIQFVKQYDN CLGSREQAER ESDAADFHTV IPCATKSSIE  240
AQFQDVYTHQ KFREVQAQFR GKANCITRLT NSALGYSVYE VGEQVFSSIF NKFVVTYDLV  300
AAEVKCQCLL FESRGILYRH ALSVLSFERV KRRHTHIKSS RDEPLLEPRS KRFDQLVFHS  360
QNICEFASKS EELTAILYCA YDNVMVEMES LKAKRKGTSS LSHEDANLES VNELQSPPRI  420
RTRGRPKNRL GSKLDKQITN TTKKKKTKGL NELNLFDAAS VVHSNSSEYQ GRVMNYQFRV  480
PTAADNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.G5Z1P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445ESL4	0.0	A0A445ESL4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-24	far-red elongated hypocotyls 3