PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G4AXZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 418aa    MW: 45923.1 Da    PI: 7.6061
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G4AXZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.6e-0995115526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ + G C yG+rCkF+H+
  Araip.G4AXZ  95 VCNYWVQ-GNCGYGERCKFIHS 115
                  6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.262549IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.3472950IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.80790117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-691115IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-794113IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-695115IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.96E-43109408IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.108.8E-44114408IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.9E-5121160IPR001680WD40 repeat
PfamPF004000.024124160IPR001680WD40 repeat
PROSITE profilePS5029420.804128330IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.115128169IPR001680WD40 repeat
PROSITE patternPS006780147161IPR019775WD40 repeat, conserved site
PRINTSPR003206.2E-6147161IPR020472G-protein beta WD-40 repeat
SMARTSM003202.7200237IPR001680WD40 repeat
SMARTSM003203.8E-5244281IPR001680WD40 repeat
PfamPF004000.0016247281IPR001680WD40 repeat
PROSITE profilePS5008212.848251290IPR001680WD40 repeat
PROSITE patternPS006780268282IPR019775WD40 repeat, conserved site
PRINTSPR003206.2E-6268282IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0057284321IPR001680WD40 repeat
PfamPF004000.0025286320IPR001680WD40 repeat
PRINTSPR003206.2E-6308322IPR020472G-protein beta WD-40 repeat
SMARTSM003203.6325368IPR001680WD40 repeat
SMARTSM003204.2374408IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDVDGGNKRV FHRLAGATAA DTRHHQKKVC YHWQAGNCNR HPCPFLHSAT VYGSTMSSNN  60
NNNGRRSQTF MNGTSTWGHG SGGGNHRAVR KADKVCNYWV QGNCGYGERC KFIHSWSCGD  120
GFSLLTQLEG HTKVVSGIAL PSGSDKLYTA SIDETLRVWD CQSGQCTAEI NVGGEVGCMI  180
NEGPWIFVGI PNCVKAWNTQ TCMELSLQGP VGQVYALVVN NDILFAGTQD GSILAWKFNV  240
VVNVFEPAAS LTGHSRGVVS LVVGPNRLYS ASMDNTIRVW NLEHLQCLQI LTDHTSIVMS  300
VLCWDQFLLS CSLDKTVKVW VTTESGKLEV TYTHKEEHGV VALCGVHDSQ GKPILLCSCT  360
DNTLRLYELP SFLDRGKIFT KQEIRTIKMG PGGIFFTGDG SGQVRVWNWI IDPTISIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-191074085323Tako8
6g6n_A2e-191074085323Tako8
6g6n_B2e-191074085323Tako8
6g6n_C2e-191074085323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G4AXZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016173586.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_025677434.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A444XX420.0A0A444XX42_ARAHY; Uncharacterized protein
STRINGXP_004513686.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1