PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HSF

Protein Properties

Length: 357aa MW: 40293.4 Da PI: 7.0119

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.FU4GL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.8	4e-34	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y++++d++++ li w +nsf+v+d+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ll++i Araip.FU4GL 16 FVIKTYHMVNDPSTDYLIAWGPANNSFIVVDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKNIV 103 9******************999*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ Araip.FU4GL 104 RRKH 107 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.6E-53	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.9E-36	13	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.16E-32	13	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-29	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-18	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-18	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-18	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVSINGMEQN NVIAPFVIKT YHMVNDPSTD YLIAWGPANN SFIVVDPLDF SQSLLPAFFK 60 HNNFSSFVRQ LNTYGFRKVD PDKWEFANEW FLRGQKHLLK NIVRRKHGTR SYNSLHFNNH 120 HHGGKQQILA AEELDDEAMM VEIARLKEEQ KALEQELQGM NKRLETTEKR PQQMMAFLCK 180 VVDDPEVLSR VLLERETRQI ADKKRRLITA ATSSSSSSGV AIKTELEEEE PTVGNIISSS 240 PETGFEIDNF CHMASPSPPQ EAAPVAMGWL GQPRPRIGHH YQQQGHNGYR SYNNNYNYSS 300 AATPKPLTVV PPTAPPQGNG TGGGKGHVNF FSEMAAENSP RPPYPFSLLE GVYIYIF

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVSINGMEQN NVIAPFVIKT YHMVNDPSTD YLIAWGPANN SFIVVDPLDF SQSLLPAFFK  60
HNNFSSFVRQ LNTYGFRKVD PDKWEFANEW FLRGQKHLLK NIVRRKHGTR SYNSLHFNNH  120
HHGGKQQILA AEELDDEAMM VEIARLKEEQ KALEQELQGM NKRLETTEKR PQQMMAFLCK  180
VVDDPEVLSR VLLERETRQI ADKKRRLITA ATSSSSSSGV AIKTELEEEE PTVGNIISSS  240
PETGFEIDNF CHMASPSPPQ EAAPVAMGWL GQPRPRIGHH YQQQGHNGYR SYNNNYNYSS  300
AATPKPLTVV PPTAPPQGNG TGGGKGHVNF FSEMAAENSP RPPYPFSLLE GVYIYIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-25	13	105	26	129	Heat shock factor protein 1
5d5v_B	7e-25	13	105	26	129	Heat shock factor protein 1
5d5v_D	7e-25	13	105	26	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.FU4GL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-48	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016203694.1	0.0	heat stress transcription factor C-1
Swissprot	Q9LV52	8e-88	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A444YZZ1	0.0	A0A444YZZ1_ARAHY; Uncharacterized protein
STRING	XP_007152829.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8367	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	6e-81	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]