PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.FPJ3C

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 351aa MW: 40499 Da PI: 8.5944

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.FPJ3C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.9	3.4e-18	51	135	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+ Araip.FPJ3C 51 KFYKDYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPY 135 6**************98887..8889*********998877...8999**********998879************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-15	51	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	296	332	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.1E-5	298	329	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	307	334	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MVNSSSDCQV NEGKLDFEFE SNEVPEPLCV VDDQFVPKVR MTFTTLEDAG KFYKDYAKAA 60 GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPYCLSKV EMLKQHRELS MSIRRTIENN EEADRHVWVP IYLDHHFWAG 180 MRSTQRSESM HSFFNKFITW NTSLIQFFKQ YDNCLGSREQ AERESDAADF HTVIPCATKS 240 SIEAQFQDVY THQKFREVQA QFRGKANCIT KLTNSALGYS VYEVGEQIFS SIFNKFVVTY 300 DSVAAEVKCQ CLLFESRGIL CRHALSVLSF ERVSQVSPRY ILERWSKKVK R

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MVNSSSDCQV NEGKLDFEFE SNEVPEPLCV VDDQFVPKVR MTFTTLEDAG KFYKDYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPYCLSKV EMLKQHRELS MSIRRTIENN EEADRHVWVP IYLDHHFWAG  180
MRSTQRSESM HSFFNKFITW NTSLIQFFKQ YDNCLGSREQ AERESDAADF HTVIPCATKS  240
SIEAQFQDVY THQKFREVQA QFRGKANCIT KLTNSALGYS VYEVGEQIFS SIFNKFVVTY  300
DSVAAEVKCQ CLLFESRGIL CRHALSVLSF ERVSQVSPRY ILERWSKKVK R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.FPJ3C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020981527.1	1e-124	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444YSY6	0.0	A0A444YSY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-29	far-red elongated hypocotyls 3