PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FJ0ZG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 653aa    MW: 71357.6 Da    PI: 6.8606
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FJ0ZGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093714081954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Araip.FJ0ZG 371 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 408
                  554458******************************88 PP
2BELL116.21.7e-37242313172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+ +kkakLls+l+eV++rY+qy++q+++v+ssFe++ag+gs + Yt+lAl++iS++FrcLkdai+ qi
  Araip.FJ0ZG 242 ERQEISMKKAKLLSMLDEVEQRYRQYQQQMEVVVSSFEQAAGIGSGRTYTALALQTISKQFRCLKDAITRQI 313
                  79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-59174311IPR006563POX domain
PfamPF075265.1E-46179310IPR006563POX domain
PROSITE profilePS5007112.147349412IPR001356Homeobox domain
SMARTSM003891.4E-8352416IPR001356Homeobox domain
CDDcd000862.73E-12352413No hitNo description
SuperFamilySSF466898.55E-17353419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28355418IPR009057Homeodomain-like
PfamPF059202.7E-18369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MATYFHGNSE IQAPSSADGL QTLVLMNPPP PPPPAPAAYI HYPDAPPPSH APANLLFLNS  60
SATGNNSFSP HAPPPHTQQF VGIPLSSQDI NHHHDVSALH GFLHRMQYNP WTTMDPTSAA  120
RETPRAQQGL SLSLSSQQAG LGSFRDVAPQ ALSGDEICGG RSTSSASAVT NGGSSIQSVI  180
LSSKYLKAAH ELLEEVVNVN NAELATKKMM KTVGESSTAA SGDGSIGGEG SGKRSSELSS  240
AERQEISMKK AKLLSMLDEV EQRYRQYQQQ MEVVVSSFEQ AAGIGSGRTY TALALQTISK  300
QFRCLKDAIT RQIKGANKSL GEEEGSRLKY VDHHLRQQRA LQQLGMIQHN AWRPQRGLPE  360
RSVSLLRAWL FEHFLHPYPK DSDKHMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYAE  420
EMKDATTSDD KSNNTNNQDP STKIADKLPT SETESDKQDH NAPMVSPVEG NMRNQPGFSF  480
IMGSSELEGI TQHQQGNSPK KPRINNNEAL HSSQSNIPSM NMMDVKPNEQ GRQGYSFMGN  540
QTNFISGFGQ YPSIGDMDRF DPEQFTTPPP RFSGNGVSLT LGLDSLPGTH HQSFLPNQNI  600
QLGRSIDIAE PNDFVGAMNT SSSPHNSAAA AFESIGMQNP KRFAAQLLPD FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16358416563Homeobox protein Meis2
3k2a_B8e-16358416563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FJ0ZG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180012.10.0BEL1-like homeodomain protein 1
RefseqXP_016180013.10.0BEL1-like homeodomain protein 1
RefseqXP_016180014.10.0BEL1-like homeodomain protein 1
RefseqXP_016180015.10.0BEL1-like homeodomain protein 1
RefseqXP_016180016.10.0BEL1-like homeodomain protein 1
RefseqXP_025683253.10.0BEL1-like homeodomain protein 1
RefseqXP_025683254.10.0BEL1-like homeodomain protein 1
RefseqXP_025683255.10.0BEL1-like homeodomain protein 1
RefseqXP_025683256.10.0BEL1-like homeodomain protein 1
RefseqXP_025683257.10.0BEL1-like homeodomain protein 1
RefseqXP_029152363.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-158BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A444X9040.0A0A444X904_ARAHY; Uncharacterized protein
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-127BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]