PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.FB87S | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 889aa MW: 99215.4 Da PI: 7.2232 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 678 | 716 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lFe ++yp+ +++ LA+++gL+ +qV++WF N R + Araip.FB87S 678 LFEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 716 5775569******************************87 PP | |||||||
2 | BELL | 89.8 | 2.8e-29 | 543 | 603 | 12 | 72 |
BELL 12 LlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 L sl + V +rY+qy++q+q+v+ssFe vagl sa+pY+slAlk +SrhF+cLk+ i++q+ Araip.FB87S 543 LASLANSVTRRYRQYHQQMQMVVSSFESVAGLSSATPYISLALKSVSRHFKCLKNSISDQL 603 7899******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-26 | 389 | 601 | IPR006563 | POX domain |
Pfam | PF07526 | 4.0E-39 | 394 | 600 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 657 | 720 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-11 | 660 | 721 | No hit | No description |
SMART | SM00389 | 8.2E-9 | 660 | 724 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.64E-17 | 661 | 727 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 663 | 724 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.2E-18 | 677 | 716 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MSGLRPDHQS PHHVAQQIRR DKLRVQNISH HPQSQDFPNN LEQFNLDLLQ VRNVRNAHNM 60 LDDEPHPPPP GVYSSQVSNF LSTPLNPLEY HELATVAAAE QPSSSCSRVM MHQSELRSLG 120 NWRSSANSNQ GCDWFVNYAS GSSSMANNES NNPNTTTHLA TEMNNVSYNQ HYEKPSCYNE 180 FTDVIANREI QKQLGGGVLH HPSSSSSMSP FYQNTLQDIV KSASISAQGS DNMASLMQQP 240 GHGIWVGDGS GLDLHPSYGN QPNQFRCAGG NPWTNRTVDN ALRWNSSPLG FIDKKDDEHS 300 GRPLMSNSNP QNLSLSLSSN SQSKTSVSQF EQVSASDDLQ CKDPQYMKYV RAFMKPSIVS 360 RDSGKSPQDP VGVPSSTSYR NVGPLGPFTG YATILKSSRF LKSAQQLLDE FCRISSPRFS 420 KSRDVTQRLS GEASASTSTD VITVDNQTEA AAKEGSNSGS SSSMFHGANE NKADWGTGSG 480 SCLSPRPDYQ QKKARLLFMQ EELGSFCMPK LMYLHNNPVL GTKIQKKNSF MLFLAWTLFY 540 VVLASLANSV TRRYRQYHQQ MQMVVSSFES VAGLSSATPY ISLALKSVSR HFKCLKNSIS 600 DQLKHISEVL GEDFSVPRTS TCGKDDTASM GRLSCMDQSF QKNKSGRGGT GLVEPQQHVW 660 RPQRGLPEHS VAILKAWLFE HFLHPYPTDT DKHMLATQTG LSRNQVSNWF INARVRVWKP 720 MVEEIHMLET KGTTGANKNN NNHPGTENER ACVNEDGSSS QQHRVMEGTQ SKFDMHSLIP 780 ENQQQSHECM ELEMESTTNE EQWSQEKRSK LECEMSSTSM DEGSLMMGFM PYSRRDHQVG 840 GLGSVSLTLG LRHGVEAVVQ NQQQQQQLQE EQLRRHFGGH MIHDFILVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 666 | 724 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 666 | 724 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.FB87S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016171911.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_020964299.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_020964300.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_020964301.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_025672602.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_025672603.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_025672604.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_025672605.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_025672606.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A444Y806 | 0.0 | A0A444Y806_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150172.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-65 | BEL1-like homeodomain 8 |