PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.F6MG1

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 290aa MW: 33162.6 Da PI: 6.8654

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.F6MG1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	9	84	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p+kf++++gg +++ + l+ ++g +W+v+ ++++g ++++kGWkeF+ L+ g + F+++g+s+f v++f+ Araip.F6MG1 9 KIPNKFTSKYGGGVKNP--VYLKPPDGTQWKVQW--TQHDGDILFEKGWKEFAAYYSLDHGHLLRFEFNGTSCF--EVHIFD 84 69******5554455..***********..************************************..888887 PP
2	B3	37.5	4.3e-12	201	283	9	94
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++l+++r + +f ++ ++ke++++++ +g+ W kl + ++++GW+ F +n+Lk+gD++vF+l++ ++ l Araip.F6MG1 201 SNLQRSRANFKASFYIKYFENKEQNVEIR---YEGKLWPAKLLCYPAAAAAYISNGWRPFSLENDLKVGDVCVFELISGENPVLDA 283 55666777788899999988889988888...689*****88999999***********************99765554555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.534	1	86	IPR003340	B3 DNA binding domain
SMART	SM01019	8.2E-6	4	86	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.4E-18	8	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.7E-12	9	84	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-17	9	86	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.94E-12	10	84	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.3E-18	186	289	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.22E-16	187	289	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.31E-13	192	287	No hit	No description
SMART	SM01019	6.1E-7	194	289	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-10	202	287	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.842	231	289	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSGSFALQKI PNKFTSKYGG GVKNPVYLKP PDGTQWKVQW TQHDGDILFE KGWKEFAAYY 60 SLDHGHLLRF EFNGTSCFEV HIFDMSGLEI HYPFNNRIDN DSVETLNELP PQCWGREQKR 120 LKTPLSLSLP FTSKQLRIAT ETRDVEGGSQ PEEKNIEMPI IPSVIHRSDV FEPGTCGFRC 180 LEEAQKFNSE NPSFMIKLGK SNLQRSRANF KASFYIKYFE NKEQNVEIRY EGKLWPAKLL 240 CYPAAAAAYI SNGWRPFSLE NDLKVGDVCV FELISGENPV LDAHIYRANG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.F6MG1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179043.1	0.0	B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBL	A0A444XAS3	0.0	A0A444XAS3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-29	B3 family protein