PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.F5A77

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 387aa MW: 45221.4 Da PI: 8.2714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.F5A77	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.5e-17	12	101	2	91
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +Y +YA ++GF v+++++ + ++++ ++++ + C++ g+r+++ k+ +r++++ t+Ck + + ++k +g+w+++++e H+H+l+p Araip.F5A77 12 YYYRYAARTGFVVKIRTTGWEtrNDQRVVVNQALHCNRDGYRTSRVKA---PKRRKTVVSTNCKTRCYLALDKiTGQWRISRIEVSHSHPLNP 101 8*********99887654422566678999*********999...66667777888888888888888**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-14	12	101	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.444	274	312	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.8E-5	284	310	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MCFGTLENAR AYYYRYAART GFVVKIRTTG WETRNDQRVV VNQALHCNRD GYRTSRVKAP 60 KRRKTVVSTN CKTRCYLALD KITGQWRISR IEVSHSHPLN PKLSGMFSAN RQLNLHVKDL 120 IQQNDQAGIR PSKTYQALAN ATNMFDDRHM WVPVFFKDEF WAGMRSTQRS ENMHSVFDKY 180 LNSKSSLLQF FRQYQNCVID KEQKELECDA ADLRGIIPCV SSSPIEKQFQ REYTNSMFRD 240 DQFIKKADCD ISSVNHHGTS IVCEVDQQKI VFDMLIPSRV LPQSSEVQCD CFMFQSNSIL 300 CCHSLVVLLH FCVTAVSSQY ILSRWSKNVS WRHTYIRSSI DMDRSDESMT IFRELCSDFY 360 VDQDFVATSE YKVDSYEIIR IFIYDLD

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MCFGTLENAR AYYYRYAART GFVVKIRTTG WETRNDQRVV VNQALHCNRD GYRTSRVKAP  60
KRRKTVVSTN CKTRCYLALD KITGQWRISR IEVSHSHPLN PKLSGMFSAN RQLNLHVKDL  120
IQQNDQAGIR PSKTYQALAN ATNMFDDRHM WVPVFFKDEF WAGMRSTQRS ENMHSVFDKY  180
LNSKSSLLQF FRQYQNCVID KEQKELECDA ADLRGIIPCV SSSPIEKQFQ REYTNSMFRD  240
DQFIKKADCD ISSVNHHGTS IVCEVDQQKI VFDMLIPSRV LPQSSEVQCD CFMFQSNSIL  300
CCHSLVVLLH FCVTAVSSQY ILSRWSKNVS WRHTYIRSSI DMDRSDESMT IFRELCSDFY  360
VDQDFVATSE YKVDSYEIIR IFIYDLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	63	KAPKRRK
2	59	65	PKRRKTV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.F5A77

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025607877.1	1e-140	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445AXW4	1e-163	A0A445AXW4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-22	far-red elongated hypocotyls 3