PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.F4LE5

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 488aa MW: 56011.2 Da PI: 8.809

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.F4LE5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.5e-17	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++k+ +ei+++ +Cs+e k +++ + +++t+ +C a++ ++ k g w ++k++l+H+H+++p Araip.F4LE5 51 KFYRNYAKAAGFSTRVRSTNKK--GNEIKNQLITCSREEKWKSKISP---TEKTNLIAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6**************98887..8889*******99998776...999***********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-14	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MDDSTSDYQL NQGEVDYEFE SNENPEPLSV IDDQFVSKVG MTFTTLEDAR KFYRNYAKAA 60 GFSTRVRSTN KKGNEIKNQL ITCSREEKWK SKISPTEKTN LIAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH 180 FWAGMRSTQR SESIHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 240 ATKSSIEAQF QDVYTHQKFR KFQAQFREKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF 300 VVTYDSVAAE VKGKCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRQHTHI 360 KSSHDEPLLE PRSKRFDQLV FCSQNICEFA SESEELTAIL HRTYDNVMAE MESLKAKRKG 420 TSSLSHEDAN LESVNELQSP PRIRTRGRQK NRLGSKLDKQ IANATKKKKT KVLSEFRVPG 480 AGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MDDSTSDYQL NQGEVDYEFE SNENPEPLSV IDDQFVSKVG MTFTTLEDAR KFYRNYAKAA  60
GFSTRVRSTN KKGNEIKNQL ITCSREEKWK SKISPTEKTN LIAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESIHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR KFQAQFREKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF  300
VVTYDSVAAE VKGKCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRQHTHI  360
KSSHDEPLLE PRSKRFDQLV FCSQNICEFA SESEELTAIL HRTYDNVMAE MESLKAKRKG  420
TSSLSHEDAN LESVNELQSP PRIRTRGRQK NRLGSKLDKQ IANATKKKKT KVLSEFRVPG  480
AGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.F4LE5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444Z4I2	0.0	A0A444Z4I2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	8e-33	far-red elongated hypocotyls 3