PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EZ6NU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 441aa    MW: 50509.3 Da    PI: 9.0745
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EZ6NUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.91.2e-1659145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.EZ6NU  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNSTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6***************998776..8889***********99998776...8999999***********998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1459145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186266302IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-5268299IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-4277304IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEVYYI RHEWHLSVVD NELVPKVGMT FTTLEDVGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREEKWKSK ISPTEKTNST AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHRELSMS IRRTIENNEE AGMRSTQRSE  180
SMHSFFNKEQ AERESDAADF YTVIPCATKS SIEAQFQDAY THAKFREVQA QFRGKANCIT  240
RLKNSALGYS VYEVGEQVSS SIFNKFVVTY DSVAAEVKCQ CLLFELRGIL CRHALSVLSF  300
EQVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLMEPRSK RFDQLVFRSQ NICKFASESE  360
ELTAILHRAY DNVMAEMESL KAKRKGTSSL SQEDANLESV NELQSPPRIR TRGHPKNRLG  420
SKLDKQIANA TKKKKTKVLS E
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EZ6NU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993575.11e-179protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A2R80.0A0A445A2R8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-20far-red elongated hypocotyls 3