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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.EV6EL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25299.2 Da PI: 10.1844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.4 | 4e-06 | 124 | 150 | 5 | 30 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 5 hnerErrRRdriNsafeeLrellPk.a 30 hn++Er R +ri +++ L+el+P+ + Araip.EV6EL 124 HNIAERLRKERIAERIRALQELVPSvN 150 9***********************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.98E-7 | 117 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.38E-4 | 117 | 151 | No hit | No description |
PROSITE profile | PS50888 | 10.055 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-6 | 121 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MLIVAVAALT IALLRRSSHH RLLYPSSRGI YLREATAFQQ STELGLNLDQ GKGADRVTAP 60 EVGFLNPPEE ASGSGKHFHD DVLDARAKNV FHGQPMPTTI PAAPHPPTMR PRVRARRGQA 120 TDPHNIAERL RKERIAERIR ALQELVPSVN KVCNCSNAEQ AFSFFDSACS ALLPCAIRFC 180 PNFHLLLGCL LAKMEAEKRS LWSWTASIEK RSLFPNAKSV ALGAEKRSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.EV6EL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029147070.1 | 5e-95 | transcription factor UNE12-like | ||||
Swissprot | O22768 | 9e-30 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A444Z5I7 | 1e-60 | A0A444Z5I7_ARAHY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_52.97 | 5e-48 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-25 | bHLH family protein |
Publications ? help Back to Top | |||
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