PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EDM7N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 256aa    MW: 29056.8 Da    PI: 9.9197
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EDM7NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.58.5e-2956170389
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................s 66 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k  i++l+ +                                  s
  Araip.EDM7N  56 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKLDIDKLPPLhfpqpcfqppqtlfphllhdpssfwkprfweldsS 153
                  79*************************************************************88888777777777777655543333333333221 PP

          TCP  67 sssaseceaesssssasnsssg.........k 89 
                                 as+sss+          
  Araip.EDM7N 154 ---------------ASSSSSSrflkgkdlmT 170
                  ...............22222222222211210 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-2657170IPR005333Transcription factor, TCP
PROSITE profilePS5136928.44257115IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMMETKEEGM IIEENKKKSN ENDKFTLKGS AAASSSTRQW SAFRNPRIVR VSRSFGGKDR  60
HSKVCTIRGL RDRRIRLSVP TAIQLYDLQD KLGLSQPSKV IDWLLDATKL DIDKLPPLHF  120
PQPCFQPPQT LFPHLLHDPS SFWKPRFWEL DSSASSSSSS RFLKGKDLMT TMPSDNNNNK  180
AKWIFKSNNA DHENQEFGGG YTTQRLFPME TQTTTNNNPF QMGDYYGSYP MMNNGGLMQL  240
NHLSSLQVGP SGSSQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1862116155Putative transcription factor PCF6
5zkt_B4e-1862116155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EDM7N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020970331.11e-176transcription factor TCP5-like, partial
SwissprotQ9FME31e-49TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A444X7J21e-173A0A444X7J2_ARAHY; Uncharacterized protein
STRINGGLYMA04G32324.12e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]