PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E6C1Q
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 845aa    MW: 93688.6 Da    PI: 5.2786
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E6C1QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1752107156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+ +++p++++r eL + lgL+  q+k+WFqN+R++ k
  Araip.E6C1Q  52 KKRYQRHTAYQIQEMETFFKACPHPDEQQRIELGNVLGLDHLQIKFWFQNKRTQLK 107
                  688999**********************************************9988 PP
2START159.13.5e-503775992206
                  HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
        START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                  la + ++el ++++a+ep+Wv+ +   e  n++e++++f+ + +     +++e +r+s+v  m++++lve+l d+   W++ +     ka+  +v+s+
  Araip.E6C1Q 377 LAAASLEELKALVQAGEPMWVSGAhnsETINEQEYYRTFPGGIGprllgYKSESSRESRVINMNHVNLVEILNDVD-LWSRVFCsivsKAAGFQVLST 473
                  67889999****************9988899********88888****************************9999.*****999999********** PP

                  T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE.EEEEEEE-EE--SSXX CS
        START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh.skvtwvehvdlkgrlp 177
                  g      g lq+ ++e+q+++plvp R+++f+Ry+++l++g+wv+vd S++  q++ +  +  R  ++pSg+li+ +++g+ +kvtwvehv++++r  
  Araip.E6C1Q 474 GqagsydGNLQVVSSEFQMPTPLVPaREYYFLRYCKKLQDGRWVVVDASLETSQPNAT-IPPTR--RRPSGCLIQASPDGYsTKVTWVEHVEVDDRAL 568
                  *******************************************************995.44455..6**************99***********9954 PP

                  ..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 ..hwllrslvksglaegaktwvatlqrqcek 206
                     +++++lv+sgla+ga++wva l+r ce+
  Araip.E6C1Q 569 mvNSMYKPLVESGLAFGARRWVAQLDRRCER 599
                  45***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1846111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1848114IPR009057Homeodomain-like
PROSITE profilePS5007115.66149109IPR001356Homeobox domain
SMARTSM003895.5E-1651113IPR001356Homeobox domain
PfamPF000463.4E-1552107IPR001356Homeobox domain
CDDcd000861.18E-1552109No hitNo description
PROSITE profilePS5084836.806367602IPR002913START domain
SuperFamilySSF559613.16E-29371601No hitNo description
CDDcd088752.27E-96371598No hitNo description
SMARTSM002341.4E-40376599IPR002913START domain
PfamPF018524.8E-42377599IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-7478595IPR023393START-like domain
SuperFamilySSF559615.4E-16624814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MSNHSMMNNN SSGSDYFLRK ILEIQDFEVD TDSHTNMQQQ PPPGYGSDHH KKKRYQRHTA  60
YQIQEMETFF KACPHPDEQQ RIELGNVLGL DHLQIKFWFQ NKRTQLKNQY ERNENFVLKN  120
ENEELRAENE NYKEILNSIR CHGCGGPPPP PLTYDQMKQE NNKLREQIEW MSTMMSNCVL  180
QEPDNTSNPN ITVPQNVPNI ESFQQNNTNN MMPRTQSVPN QELGNMASPP QSNNIDMLSP  240
SMFNQGIIDS MPLTQQNNDI DMPRNVMNQG IVKDMPSSQA HNNDINVTPP MSMLNQGIGD  300
NIAIIPPNVL DQGNCSVPSS SSQHNNEIYI NLPLSSLNQD VGSYGAKSKD KAGETSSGSD  360
PLIRSLPVSN KAMIEELAAA SLEELKALVQ AGEPMWVSGA HNSETINEQE YYRTFPGGIG  420
PRLLGYKSES SRESRVINMN HVNLVEILND VDLWSRVFCS IVSKAAGFQV LSTGQAGSYD  480
GNLQVVSSEF QMPTPLVPAR EYYFLRYCKK LQDGRWVVVD ASLETSQPNA TIPPTRRRPS  540
GCLIQASPDG YSTKVTWVEH VEVDDRALMV NSMYKPLVES GLAFGARRWV AQLDRRCERI  600
ASAVQSTTIL QQQEDQLSVT SVEGKKGLVK LAERMVMDFL SGVGASTVEN WAIVTPSTNH  660
SNIRIITRKV EDDPGRPSGI VIGAATCFHL AVPPNSFFDR VRTANARAEW DVLCTGGVAE  720
EFAHIKNGRD PGNCITLFRI KSSDAKNNGM IIVQESSSDS TGSFVIYAPV DMNSINAVIG  780
GRDPDELPIL PSGMAILPDG GGGCLVTLAF QILIESDPTK KISICSVSTI NQLVKVTVNN  840
IKALF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E6C1Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176493.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_025676295.10.0homeobox-leucine zipper protein HDG2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A444XWQ10.0A0A444XWQ1_ARAHY; Uncharacterized protein
STRINGGLYMA11G00570.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2943822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]