PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E5TT0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 730aa    MW: 83163.2 Da    PI: 9.7488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E5TT0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1829.8e-26260349290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++a+tr+gC a++++k+++ +g+w+v+++++eHnHela
  Araip.E5TT0 260 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKAVTRCGCLAEMRIKRKEgSGRWYVSRFVEEHNHELA 349
                  9****************9998.8888***************99766467888999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-23260349IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.78531564IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033539566IPR006564Zinc finger, PMZ-type
SuperFamilySSF577561.34E-5669703IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.977687703IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MSLKKGKNDD RRSAQLKGKV KPSSPSASWL KVTVAFDLWI GDNGGGWNVS KWLSQRRRCL  60
SHPPDRTSSH HRSRVVLIKG GGDRTILFVD AWVRSPCGSG GCEDVGSARV LTIDRGSCGG  120
DRAILFVDAW VRSPCGSGGC EDVGSMLDSR CGGKIIMASS SKFCKDACMW NEPLVDNWME  180
GNAGVSNPQN AFHIMAAGSI MFVFLFQDTM YDTRVEEDAE SSDWEGRGAS MLPVFLGLDG  240
LRAEDVLEME FSSPQEASGF YNNYSRLKGF ASRRGKTVRN TAGEIVRYTF VCNRQGFREK  300
KWLEKVDRKR EHKAVTRCGC LAEMRIKRKE GSGRWYVSRF VEEHNHELAY GKLVDYLRSH  360
RKISEVEVAQ LTSMREIGIS IPKIYESFAA QLGGFNLVTF TKQDMYNEIR KQRVRTTSRC  420
ESLHAKLGRF VESRYGVLEF VRNFQRCVDF LRDTEDELDF RSWYGTPVLQ TEFVELEKSG  480
WTMFTREMFL RYRDSLKRCV RVRICEFDDS DNPHAYTLQK YRRPEMNWKV YRDHISNRFT  540
CSCMRMESFG IPCVHILSVC VRLDLVEIPE SLVLRRWSKA AKLEIHNQCG EQHIVEPSVT  600
YRTRLGAFSQ LCKRLGRVAC MSDEDFKVYS NKLMSDALFL EIKYGLRPLT DNMTTANDCG  660
VKDPIRVRTK GTARMSQAGG SAPKTKRKCS TCGKLGHRRT RCPIGGAQPS TRNKESLAGR  720
NKRKRTKVTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493498DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E5TT0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016185045.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AC460.0A0A445AC46_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5