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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.E44AI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 500aa MW: 57016.9 Da PI: 9.3128 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52 | 2.4e-16 | 38 | 123 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YAk GFs+r++ ++++ +ei+++ +Cs egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++ Araip.E44AI 38 KFYRNYAKASGFSTRVRCTNRK--GNEIKNQLITCSGEGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCC 123 6***************998776..8889*************998877...8999**************998879**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-13 | 38 | 123 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.186 | 287 | 323 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-4 | 289 | 320 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.0E-4 | 298 | 325 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MGVFTVLTRC ILQPLSVVDD ELVPKVGMTF TTLEDAGKFY RNYAKASGFS TRVRCTNRKG 60 NEIKNQLITC SGEGKWKSKI SPTEKTNPTA GLNCPARIYI HTLKDVGAWI ISKVVLDHSH 120 PCCQSKAEML KQHRELSMSI RCTIENNEEA DLYEDRHIWV PIYLDHHFWA RMRSTQRSES 180 MHSFFNKYIT RNSSLIQFVK QYDNCLGSRE QAERESDAAD FHTLIPCATK SCIEAQFQDA 240 YTHAKFRKVQ AQFRGKANCI TRLKNSALGY SVYDVGEQVS SSIFNKFVVT YDSVAAEVKC 300 QCLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLIEPRS 360 KRFDQLVFHS QNICEFASES EELTAILHRA YDNVMAEMES LKAKRKGTSS LSHEDANLES 420 VNELQSPPRI RTRGRQKNRL GSKLEKQIAN ATKKKKTKVL SEINLFDSAS AAHSNCSQYQ 480 GHVMSYQFRV PAAGDNFLGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.E44AI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445B3W8 | 0.0 | A0A445B3W8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 5e-34 | far-red elongated hypocotyls 3 |