PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E31CJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 521aa    MW: 58087.9 Da    PI: 6.9848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E31CJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.6e-05160209732
                  HHHHHHHHHHHHHHHHHHCTSCCC.......................... CS
          HLH   7 erErrRRdriNsafeeLrellPkas........................k 32 
                  ++Er+RR+++ ++f  L  l+P ++                         
  Araip.E31CJ 160 IAERKRREKLSQRFIALSALVPVSYlyyvvliaipvkvskessyssddsD 209
                  68********************8666777777777777777777776662 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.3E-4160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.3306.1E-20233329IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.97E-28251338IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010214.795252328IPR000504RNA recognition motif domain
SMARTSM003603.9E-14253324IPR000504RNA recognition motif domain
PfamPF000765.1E-12254321IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3305.1E-10389466IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.97E-28392472IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.463395473IPR000504RNA recognition motif domain
SMARTSM003600.0075396473IPR000504RNA recognition motif domain
PfamPF000761.4E-5398466IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAERRLRRKL EVETGDVETE SERSKNPKPS THEVTIAPNP NLVFIMPHPI PLFINVAGAR  60
DASVGNPSSG TRNPPLSFFS LLSTLSPSSS LWLTSLTAGL TVDLSLSLRF HASLTAVSDL  120
SSSQALSLSV TIASSSSCLG CQRFLCRELV RGGFYSLVAI AERKRREKLS QRFIALSALV  180
PVSYLYYVVL IAIPVKVSKE SSYSSDDSDE EEEKPSKTPQ KSAKDVEMVD ADSAKKVSKT  240
PSTPSVATGG SKTLFVGNLS FSLQRSDFEE FFKDCGEVVD VRFSVDDTGR FKRFRHVEFA  300
IAKAAQSALE LNEHELLNHH VRLDLARERG SYILVAGNYY IFSSLPHMPH IYFYHLFLRS  360
LSCLASTYFL LFILCNTCFS FSNSFQKGDQ RQTGQTIFIR GFDKSLGEEI RASLNEHFGS  420
CREILRVSVP KDFKSGGVIY SFAYIDFKDF SSMKKALELN ETELAGGYYL SVEDRVMVVD  480
VEAYTYDNEV IKKAEAMGKP KNPEEEATVE TTRAIKHHQE S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E31CJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0991501e-74DQ099150.1 Arachis hypogaea clone AH2TC9E08 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973096.11e-136nucleolin 1-like
TrEMBLA0A445DJ341e-160A0A445DJ34_ARAHY; Uncharacterized protein
STRINGGLYMA11G10790.13e-73(Glycine max)