PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DW8GW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 300aa    MW: 33970.3 Da    PI: 9.0723
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DW8GWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-152202512051
                  HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  20 ilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  +lKKA+E+ vLCdaeva+iifs++gkl+eyss
  Araip.DW8GW 220 LLKKANEIAVLCDAEVALIIFSTKGKLFEYSS 251
                  8*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534746.3E-1245139IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.9E-1846140IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:1.10.8.509.6E-26150217No hitNo description
SuperFamilySSF469469.81E-14151223IPR010979Ribosomal protein S13-like, H2TH
PfamPF004161.0E-12152211IPR001892Ribosomal protein S13
PROSITE profilePS5015915.513153262IPR001892Ribosomal protein S13
SMARTSM004326.7E-8203252IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-11215230IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.236220253IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-13220255IPR002100Transcription factor, MADS-box
PfamPF003191.9E-11220249IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-11230251IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKRFGHHLKL LFNDKKPSQS QTKQLCRGFC QGTKFVSPNQ DDFAVISPRI KLRDGRHLAY  60
LERGVSKDVA KYKIIIVHGF GSSKEMNFLA PQELIDELGI YLLQYDRAGY GESDPNPKHS  120
LKSEALDIQE LADQLELGPQ FYVRELSIEC ARVGGVEIPN NKRIEFSLQY IHGIGRSRAR  180
KILCDISMDN KVTKDLSEED LITLRDEVSK YVIEGDLVRL LKKANEIAVL CDAEVALIIF  240
STKGKLFEYS SDPWFQRKKN NSSMAQTLVM PIAPSLALIS NPRPLSRAVY FPVLNPPKVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mmj_m1e-3314622943122plastid ribosomal protein uS13c
5mmm_m1e-3314622943122plastid ribosomal protein uS13c
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DW8GW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3385299e-99EU338529.1 Arachis diogoi clone AdDR-56 30S ribosomal protein S13-1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445ATQ10.0A0A445ATQ1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF446622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-13AGAMOUS-like 8