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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.DW1WN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23926 Da PI: 7.2495 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.6 | 1e-38 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r da+ +l yeA r+rdPvyG+v++i++lqqq+ +l+ael ++ Araip.DW1WN 13 PCGACKFLRRKCVKGCIFAPYFDSDQgTSHFAAVHKVFGASNASKLLMRIPPHKRLDAVLTLSYEALSRVRDPVYGCVAHIFALQQQVVNLQAELTYV 110 7***********************9989********************************************************************99 PP DUF260 98 kee 100 +++ Araip.DW1WN 111 QAR 113 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.386 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-37 | 13 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDCDENNQQR GGPCGACKFL RRKCVKGCIF APYFDSDQGT SHFAAVHKVF GASNASKLLM 60 RIPPHKRLDA VLTLSYEALS RVRDPVYGCV AHIFALQQQV VNLQAELTYV QARLATMHRI 120 PIAAAAASPP TLHSSSSLDH LASSNADLQN ASNNMSMNFD PPPQPPPHST TLESSSFINS 180 SDEPPPPLLL EDGDLQTLAR EFVSRYLPGV RFQPSNNSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 11 | 114 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 11 | 114 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.DW1WN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186139.1 | 1e-162 | LOB domain-containing protein 19-like | ||||
Refseq | XP_025634174.1 | 1e-162 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-69 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A445E9P0 | 1e-160 | A0A445E9P0_ARAHY; Uncharacterized protein | ||||
STRING | XP_004510943.1 | 1e-95 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 4e-63 | LOB domain-containing protein 31 |