PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DEH65

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 343aa MW: 39755.5 Da PI: 6.6997

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DEH65	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.7e-55	30	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++ k+ + +e+ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s+ Araip.DEH65 30 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQEicKIGSeDENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSS 126 69**************************.9***********954555552556**********************************8 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg++ktLvfykgrap+g k++W+mheyrl Araip.DEH65 127 sSHCLVGMRKTLVFYKGRAPNGLKSNWIMHEYRL 160 55567*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-62	25	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.755	30	176	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	31	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
QIYVQGFYLE FLGAGYIKLR RFEMNAFSHV PPGFRFHPTD EELVDYYLRK KIASKRIDLD 60 VIKDVDLYKI EPWDLQEICK IGSEDENEWY FFSHKDKKYP TGTRTNRATK AGFWKATGRD 120 KAIYSSSSHC LVGMRKTLVF YKGRAPNGLK SNWIMHEYRL DSNQEDGWVV CRVFKKRMPT 180 LRNVVDYDDQ LPFMQGSPST HYPCKHDLHQ FQYNTHDAFL QLPHLESPNQ VLSSPYAYAE 240 NNNNNNGTLQ SYSSERIQQQ LHLLYGSNIE QAVVVDQVTD WRVLDKFVAS QLMSQDQDQA 300 SKETCSVADE QHVATTVLPN GSTKQDDYVS TSASSNCDIH LWN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

QIYVQGFYLE FLGAGYIKLR RFEMNAFSHV PPGFRFHPTD EELVDYYLRK KIASKRIDLD  60
VIKDVDLYKI EPWDLQEICK IGSEDENEWY FFSHKDKKYP TGTRTNRATK AGFWKATGRD  120
KAIYSSSSHC LVGMRKTLVF YKGRAPNGLK SNWIMHEYRL DSNQEDGWVV CRVFKKRMPT  180
LRNVVDYDDQ LPFMQGSPST HYPCKHDLHQ FQYNTHDAFL QLPHLESPNQ VLSSPYAYAE  240
NNNNNNGTLQ SYSSERIQQQ LHLLYGSNIE QAVVVDQVTD WRVLDKFVAS QLMSQDQDQA  300
SKETCSVADE QHVATTVLPN GSTKQDDYVS TSASSNCDIH LWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	20	177	5	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DEH65

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020978772.1	0.0	NAC domain-containing protein 7
Refseq	XP_025653690.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-116	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A444Z8T5	0.0	A0A444Z8T5_ARAHY; Uncharacterized protein
STRING	GLYMA05G04250.3	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-115	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]