PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DCD5Q
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 459aa    MW: 52001.3 Da    PI: 5.9766
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DCD5QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.7e-361372282102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye++ed+e++ ++swsen +sf+v++++efak +LpkyFkhsnf+SF+RQLn+YgF+kv++++         weF+++ F+ gkk+ll++i+
   Araip.DCD5Q 137 FLRKTYEMVEDPETDPIVSWSENRDSFIVWESHEFAKVLLPKYFKHSNFSSFIRQLNTYGFRKVDSDR---------WEFANEGFQGGKKHLLKNIR 224
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Araip.DCD5Q 225 RRSK 228
                   **87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-38133226IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.29E-35133226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-60133226IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19137160IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-32137226IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19175187IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340176200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-19188200IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
SFTPTHTTLY SQLQSLKNRQ IEPTSKMVVV AHGGSGGGQA CSPPQFNKAI AEEKRVEMVR  60
VKSEQVTSSC HFLEQNDDVS SDESDKKRSN SEMTEEEEPR VKEEAADDGA VNLSSSSSSV  120
ELPKPMEGLN EAGPPPFLRK TYEMVEDPET DPIVSWSENR DSFIVWESHE FAKVLLPKYF  180
KHSNFSSFIR QLNTYGFRKV DSDRWEFANE GFQGGKKHLL KNIRRRSKYN KLHQGAFIDP  240
AKPCLEAEVE KLKEDQNILK LEILKLRQQQ ESSHIHISSV QDRIQNVQTK QYQMIYFLTR  300
MARKPTFMEQ LLQKIKRKRE LDGTDMLKRR RLLEPTPSVD YRCQQGHHQL STLQSELNGI  360
LSENVMNTSN KIEQTVPSPL EGELCNKVQG LRSYGFSRGG DVPSAYHAMT ENLLGENNGG  420
ADEELDVNDS NIYLELEDLI TKPTDWVGSA SAGGLVGTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-241092261129Heat shock factor protein 1
5d5v_B3e-241092261129Heat shock factor protein 1
5d5v_D3e-241092261129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316330RKRELDGTDMLKRRR
2327331KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DCD5Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202292.10.0heat stress transcription factor A-2 isoform X1
RefseqXP_025630874.10.0heat stress transcription factor A-2
TrEMBLA0A445AUN50.0A0A445AUN5_ARAHY; Uncharacterized protein
STRINGGLYMA13G16510.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-79heat shock transcription factor A2