PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.DC4LL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CPP | ||||||||
Protein Properties | Length: 914aa MW: 99371.1 Da PI: 6.4601 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47 | 4.9e-15 | 492 | 530 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag +C+++C+C++C N+ e Araip.DC4LL 492 CKRCNCKKSKCLKLYCDCFAAGIYCADDCSCQSCLNRPE 530 89**********************************876 PP | |||||||
2 | TCR | 49.4 | 8.8e-16 | 578 | 616 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s C+kkYCeC++ag+ Cs+ C+Ce+CkN Araip.DC4LL 578 RHKRGCNCKRSMCQKKYCECYQAGVGCSSGCRCEGCKNV 616 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.8E-14 | 490 | 531 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.808 | 491 | 618 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.2E-11 | 493 | 528 | IPR005172 | CRC domain |
SMART | SM01114 | 7.8E-16 | 578 | 619 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.2E-11 | 580 | 615 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MIMESPEPSK NNATSSASTI NAVAINDSPQ VQESPFFRFV NNLSPIKQPA KASHVAQGFV 60 GLNSPPLVFT SPRISCHRET HLLERPSCAQ SSSRSESQSD NRGKLIEAPG DSAKSTAELP 120 PAGEFITETV KDFDVKNDAT TQHCSPPPSV DKYLVDPVDI DQMYSVNPDE KQSNDTESSP 180 SNLAQSKKSI SEVDSKDDPC DKADKPLILL EKVDKAQTGP AYVEGHDQIT GEKNDVLMAL 240 HKRMKDNNDC TSQLLPEQTL QDVKDWEDCD EMVSTSHVGA ENVSQDASEV TLKHHGLRRR 300 CLQFEEAASN ALGSDKSCMK SNAAPIKIKM VKLSEPGTSS LFTQRCSGNS TVTCPKPSGI 360 GLHLNSIVNA MPPGCAATTG IRSSDCLQGK KSALISINKV ENMKGRLTSS NIDGQSLIDS 420 GNESQANISS LPVDSFISGS HSPTEPVAIC PESLHDKRKL SPTGDGYPEE SKQPSPSKKK 480 KRASSNNDDN GCKRCNCKKS KCLKLYCDCF AAGIYCADDC SCQSCLNRPE YENKVIETRK 540 QIESRNPLAF LPKIVPQSTD RSSNNMEDAI LMTPSSARHK RGCNCKRSMC QKKYCECYQA 600 GVGCSSGCRC EGCKNVYGTK EDYVARDHVF NKERMGSRIE NEPDGAFLNK LEMVASKSDL 660 YDLPHVSPVT PSLQCSDQGK EAAKFGLHSG QHLPSSETNV DMLPSSANYN KSLENSQSVL 720 ANLETDEMLE TASYDWQVDC SDVMDQSSPC DLVANILQDT PLSNPESMSS ASLFTSSTKE 780 CGNIPLSQSQ GRIRLISGSS LRWRGSPNTP RVRLGVKHLQ SLDSESRLFD IMEDETPDVL 840 KEGLTPTKSV KANSPNQKRV SPPHSRLRGL GSSSSGGFRT GRKFILKSVP SFPPLTPCVE 900 SKDNSSEDLG NNAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-18 | 495 | 616 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 1e-18 | 495 | 616 | 14 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.DC4LL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016162685.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_025659725.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A445CW25 | 0.0 | A0A445CW25_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G31399.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8565 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 3e-59 | Tesmin/TSO1-like CXC domain-containing protein |