PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D3IBN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 553aa    MW: 64248.1 Da    PI: 10.2691
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D3IBNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.66.5e-2683172290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++a+tr+gC a++++k+++ +g+w+v+++++eHnHela
  Araip.D3IBN  83 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKAVTRCGCLAEMRIKRKEgSGRWYVSRFVEEHNHELA 172
                  9****************9998.8888***************99766467888999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2383172IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.78354387IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033362389IPR006564Zinc finger, PMZ-type
SuperFamilySSF577569.42E-6491526IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.109.1E-4507526IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.977510526IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MPDDGIAAVL VLIRLNSQDT TGLLLRQRLY KSHPSLSQII VRLKMHVKLD ATYGNNFRLQ  60
TPDDGRLSCG LLQFQSNEIE IGFYNNYSRL KGFASRRGKT VRNTAGEIVR YTFVCNRQGF  120
REKKWLEKVD RKREHKAVTR CGCLAEMRIK RKEGSGRWYV SRFVEEHNHE LAYGKLVDYL  180
RSHRKISEVE VAQLTSMREI GISIPKIYES FAAQLGGFNL VTFTKQDMYN EIRKQRVRTT  240
SRCESLHAKL GRFVESRYGV LEFVRNFQRC VDFLRDTEDE LDFRSWYGTP VLQTEFVELE  300
KSGWTMFTRE MFLRYRDSLK RCVRVRICEF DDSDNPHAYT LQKYRRPEMN WKVYRDHISN  360
RFTCSCMRME SFGIPCVHIL SVCVRLDLVE IPESLVLRRW SKAAKLEIHN QCGEQHIVEP  420
SVTYRTRLGA FSQLCKRLGR VACMSDEDFK VYSNKLMSDA LFLEIKYGLR PLTDNMTTAN  480
DCGVKDPIRV RTKGTARMSQ AGGSAPKTKR KCSTCGKLGH RRTRCPIGGA QPSTRNKESL  540
AGRNKRKRTK VTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D3IBN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016185045.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444XCQ00.0A0A444XCQ0_ARAHY; Uncharacterized protein
TrEMBLA0A445AC460.0A0A445AC46_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-22FAR1-related sequence 5