PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.CMJ7K | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 118aa MW: 13089.7 Da PI: 4.282 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 39.7 | 1.4e-12 | 1 | 41 | 61 | 101 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +vyeA ar+rdPvyG++g i +lq q+++l+a+la++++e+ Araip.CMJ7K 1 MVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAEI 41 69**********************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.391 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-10 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MVYEAGARIR DPVYGCAGAI CQLQTQVNEL QAQLAKAQAE IANMQFQQAN MVALLYMQMA 60 EANKATATTQ EPPPSPQQSV DNFIASPPHI NNNLNFFDDN TSLNSMWELF GHDHITTF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.CMJ7K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169312.1 | 9e-84 | LOB domain-containing protein 1-like | ||||
Refseq | XP_025670753.1 | 9e-84 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 9e-25 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A444Y808 | 2e-82 | A0A444Y808_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G40370.2 | 8e-47 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-17 | LOB domain-containing protein 11 |