PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.CFK5T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 268aa MW: 30486 Da PI: 4.402 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e++++LAkklgL+ rqV vWFqNrRa++k Araip.CFK5T 68 KKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 121 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 134.7 | 3.3e-43 | 67 | 158 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l + +++ ke+e+L++e+ Araip.CFK5T 67 EKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIVKENEKLKSEVV 158 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-20 | 57 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.269 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 66 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.99E-18 | 68 | 124 | No hit | No description |
Pfam | PF00046 | 7.3E-18 | 68 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 69 | 130 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-6 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-6 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.7E-19 | 123 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MESGGRLFFD PSACRGNNNM LFLGTTADLA FRGRSILSMD ESSKRRPFFS SPDDLFDDEY 60 YEEQLPEKKR RLTSEQVNLL EKSFEEENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW 120 KTKQLERDYD VLKASYDSLL STYDSIVKEN EKLKSEVVSL NEKLQLQAKD MPGEPISDNK 180 AEPLPVEIAQ IISMKVEDRL STGSVGSAVV DEGSSPQLVS EEEDGSDDGR SIFSDVFVAA 240 EAEQQNQEEG EVLRWWGNIM LNNAAVLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 123 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.CFK5T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016203259.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Refseq | XP_025701506.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Refseq | XP_025701507.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 2e-90 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A444Z288 | 0.0 | A0A444Z288_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445D0W4 | 0.0 | A0A445D0W4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007151094.1 | 1e-132 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11283 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-83 | homeobox 1 |
Publications ? help Back to Top | |||
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