PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C9B5T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 660aa    MW: 73179.4 Da    PI: 6.7264
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C9B5TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.52.1e-1302906591373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cAea+++g+++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf++++a
  Araip.C9B5T 290 LKQLLVACAEAMADGNMNDFDQLISKAKGAVSITGEPLQRLGAYMVEGLVARKEASGTGIYRALKCREPE---GKDLLSYMQMLFEICPYLKFGYMAA 384
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea   e+++HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s   + e le +g+rLa + e++++p+ef+  v     d++ e+L
  Araip.C9B5T 385 NGAIAEACRDEDHIHIIDFQIAQGTQWMTLLQALAARPRGPPHVRITGIDDPVSRyaRGEGLEVVGKRLAMMSEKFRIPVEFHG-VPVYAPDVTREML 481
                  ****************************************************999999**************************.688999******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++++gEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r
  Araip.C9B5T 482 NIRSGEALAVNFPLQLHHTADESVDVNNPRDGILRLVKSLSPKVVTLVEQESNTNTTPFFNRFMETLDYYLAIFESIDVTLPRNSKERINVEQHCLAR 579
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivn+vaceg+er+erhe ++kW++rl++aGF++ pls+++++ ++ llr ++ + y++ e++g+++l Wk+r+L+s+SaW
  Araip.C9B5T 580 DIVNIVACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRGLLRCYS-EHYSLVEKDGAMLLAWKNRNLISASAW 659
                  *************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.623264641IPR005202Transcription factor GRAS
PfamPF035147.4E-128290659IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MSSAFQSRVE NATNVLSSPN PMKLIKTTTQ GNVHKIENPQ KKENQFRIQH ESQGTQSSSQ  60
SLQAVCVCSF LESMDSQQLY SFGVTSAGLP YIPSFPAIPS SQPNRLLGSL KFDTGNSPNS  120
PFSTHFDSDT LSAFSDSQDQ QHSPGEILSG VSTSCNSPFE TNHYLHTSVS SADSNRGSFQ  180
LYSARSSLLQ NANCNQKIRN VLLELESALM APDEEEVTTS NASMVESSGP TTSGQRNRSW  240
SHDHYGSQFV QSQGSYVTGS RQTSEFEHVM KRQKSIVEAS SPPGFPSGNL KQLLVACAEA  300
MADGNMNDFD QLISKAKGAV SITGEPLQRL GAYMVEGLVA RKEASGTGIY RALKCREPEG  360
KDLLSYMQML FEICPYLKFG YMAANGAIAE ACRDEDHIHI IDFQIAQGTQ WMTLLQALAA  420
RPRGPPHVRI TGIDDPVSRY ARGEGLEVVG KRLAMMSEKF RIPVEFHGVP VYAPDVTREM  480
LNIRSGEALA VNFPLQLHHT ADESVDVNNP RDGILRLVKS LSPKVVTLVE QESNTNTTPF  540
FNRFMETLDY YLAIFESIDV TLPRNSKERI NVEQHCLARD IVNIVACEGK ERVERHELFG  600
KWKSRLTMAG FRQCPLSSYV NSVIRGLLRC YSEHYSLVEK DGAMLLAWKN RNLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6329765926378Protein SCARECROW
5b3h_A6e-6329765925377Protein SCARECROW
5b3h_D6e-6329765925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C9B5T
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016170748.10.0chitin-inducible gibberellin-responsive protein 1
RefseqXP_025674014.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A444Y5A70.0A0A444Y5A7_ARAHY; Uncharacterized protein
STRINGXP_004487630.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-171scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]