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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.C575S | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 114aa MW: 12944 Da PI: 7.9548 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.5e-06 | 1 | 28 | 4 | 31 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 4 ahnerErrRRdriNsafeeLrellPkas 31 +h e E++RR+++ + ++Lr+llP + Araip.C575S 1 MHRETEKQRRQEMGKLCATLRSLLPLEY 28 599**********************863 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-4 | 2 | 26 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.38E-5 | 2 | 27 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MHRETEKQRR QEMGKLCATL RSLLPLEYIK KCLCPLSRLL HILIGEGLNI INTISTKKNG 60 RFIHTIQSED PNISSSADYS ELQRKLTEAI ISSSSSLPET LIRPDESCLL YLDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.C575S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020958846.1 | 4e-53 | transcription factor bHLH36-like | ||||
Refseq | XP_025656694.1 | 4e-53 | transcription factor bHLH36 | ||||
TrEMBL | A0A444YYB1 | 9e-52 | A0A444YYB1_ARAHY; Uncharacterized protein | ||||
STRING | XP_008437723.1 | 3e-19 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 3e-10 | bHLH family protein |