PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BV7GJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 617aa    MW: 70337.2 Da    PI: 9.6891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BV7GJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-17861671299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +  +++lp kf  +   +   +k+++l d+sg++W+v+l  +k +++ v+++GW++F +++gL+ gD++vF+++ +  f  +v++++k
  Araip.BV7GJ  86 TPTIMYLPDKFKPAVAAS--VNKKIILADKSGERWKVTL--SKAGSHLVFKEGWNKFSSDHGLERGDILVFHHVTDVHF--YVTIYDK 167
                  456799999997777444..3468***************..*******************************8876666..9999876 PP
2B338.81.6e-125416092389
                  .HTT---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  23 aeehggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  ++++   k++ + ++l+d++ r W v +    +kk  +   ++l kGW++F +an+++ gD ++F+l+++++
  Araip.BV7GJ 541 CRNY---KNNRMVVILQDPQKRLWPVLYHDlhDKKMHGtkaFYLIKGWSQFYRANNIQPGDLCTFELKEEDK 609
                  4444...445789***************445544443367899***********************986533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-2174170IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-1974168IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-1575166No hitNo description
PROSITE profilePS5086313.81775168IPR003340B3 DNA binding domain
SMARTSM010191.7E-1082168IPR003340B3 DNA binding domain
PfamPF023621.5E-1489167IPR003340B3 DNA binding domain
SMARTSM010190.014530615IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-12535612IPR015300DNA-binding pseudobarrel domain
CDDcd100175.77E-11539610No hitNo description
PfamPF023621.8E-10541609IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-12542614IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.898551617IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MIHSLEKLHS IKRQKIVIMT KTVQSKQASQ NGKTFLTHHN PSFLMRPEAL VCEECASRCV  60
LLHGNEKKKS SLFPPSFFRI MFDKNTPTIM YLPDKFKPAV AASVNKKIIL ADKSGERWKV  120
TLSKAGSHLV FKEGWNKFSS DHGLERGDIL VFHHVTDVHF YVTIYDKYAC EKLCFSNTRN  180
KTKRRRDSSV SPVRDVMLAT PDQNASVVSE PDAKKTNSQN KVVGVGGTPN NVENISKHDK  240
SNGSVKSTRM TENYDNTAKI TTRESRVSPV NYKLCMNPVD AILCDNSPSF EERFRGAAAF  300
LSEAELSGKK DSIRNTDRST YDNTSTCKLG ERKEKNVLKR EVREFQYAED LEGDNKVAMS  360
KKEHGFHIDG CLNTKPMLNA TPNISDAIRL KSDPMATSKG KHGLQIDGCP NTKHIVNNGI  420
PRVSSATQNG KILKKIKSEQ ADRNPSEECT FKDKVCAKGE MSKRIKKEPR MDMTYNMSRF  480
KDEFEARGIE VPKGFPKVIK KEFEKSSHKT EQNDDNDDDS DNVQLAEVVR CVELPSHLHQ  540
CRNYKNNRMV VILQDPQKRL WPVLYHDLHD KKMHGTKAFY LIKGWSQFYR ANNIQPGDLC  600
TFELKEEDKH IFNVVYM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BV7GJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187610.10.0B3 domain-containing protein Os01g0905400-like isoform X1
RefseqXP_020973368.10.0B3 domain-containing protein Os01g0905400-like isoform X1
RefseqXP_025641536.10.0B3 domain-containing protein Os01g0905400
RefseqXP_025641537.10.0B3 domain-containing protein Os01g0905400
TrEMBLA0A445AAG50.0A0A445AAG5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.19e-10B3 family protein