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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BUP6F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||
Protein Properties | Length: 125aa MW: 14462.9 Da PI: 8.9154 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.4e-20 | 6 | 57 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ +r++lg+f+tae+Aa+a++aa+ ++g+ Araip.BUP6F 6 HYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 57 7********.**********8542..4***********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 5 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-24 | 6 | 65 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.291 | 6 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.93E-20 | 6 | 66 | No hit | No description |
SMART | SM00380 | 2.1E-36 | 6 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-14 | 6 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-12 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-12 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEGERHYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFDTA EQAARAYDAA AFHFRGHRAI 60 LNFPNDYVAA SSSGSSRRSQ QQQEHMHQLD HYTTTTSFEL EYFDNKLLEE LLQGQDATTR 120 TSLPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 5 | 64 | 4 | 63 | ATERF1 |
3gcc_A | 2e-28 | 5 | 64 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BUP6F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207414.1 | 2e-89 | ethylene-responsive transcription factor ERF098 | ||||
Refseq | XP_025663469.1 | 2e-89 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 1e-36 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A444YGI2 | 5e-88 | A0A444YGI2_ARAHY; Uncharacterized protein | ||||
STRING | XP_004495105.1 | 1e-43 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-28 | ERF family protein |
Publications ? help Back to Top | |||
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