PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.BS40A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 742aa MW: 81699.2 Da PI: 7.5535 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 540 | 577 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Araip.BS40A 540 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 577 554459******************************88 PP | |||||||
2 | BELL | 100.4 | 1.4e-32 | 414 | 480 | 6 | 72 |
BELL 6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kk++Ll++l+eV++rY+qy++q+++v+ sFe v gl +a+pY+slA k++S+hFrcLk+ai++q+ Araip.BS40A 414 SRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLTNAAPYASLAIKTMSKHFRCLKNAITDQL 480 579*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-40 | 331 | 478 | IPR006563 | POX domain |
Pfam | PF07526 | 4.2E-38 | 336 | 477 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 518 | 581 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.06E-12 | 521 | 582 | No hit | No description |
SMART | SM00389 | 3.4E-10 | 521 | 585 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 523 | 588 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 524 | 585 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-18 | 538 | 577 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 742 aa Download sequence Send to blast |
LLLLKRKAFI FLSFIFWLLL NFVFYFYPFM AEEGFEGYHV PQQSRRDKLR VVVAHNQQHH 60 HQQTTTLLES SSTPPTTTTS TSWYDPSSFI PSDLLTCAAA TQQGHHGNFH LNNEPSKPNN 120 TTNLFASSSA VKQEEQQRSG LMMMGFGVVT AINNGSSSSS SSPSSNSSSV SLSHHHAYMD 180 PQSSSTLHLN NPSIHVFGNN NNNNNNNNPL FLYQPQNLRD FDNHGGYGGG GGSGGGGEIM 240 VFKPEPLSLS LSSHNHNHGS NNNNHNSNNN GNNLPLELNL QRYGAMICGG GGGVIPGLVV 300 NSSGGGSGTS NEVSRSCSSV MVVPQMMGPF TGYASVLKGS RFLKPAQQLL EELCDVGVGV 360 VGAEDKIIVA DASLMEPPPT AASTTTPLME CLNHSHHEDP LLLADQHAAA AVESRKKSRL 420 LTMLDEVYRR YRQYYQQMHA VVTSFEYVSG LTNAAPYASL AIKTMSKHFR CLKNAITDQL 480 QFNNKTHFQL SNRKDESPRF GNNDRGPYGQ RSGFIEHQPV WRPQRGLPER AVTVLRAWLF 540 EHFLHPYPTD TDKLMLAKQT GLSRSQVSNW FINARVRLWK PMVEEIHMLE TRQAQKNTQR 600 EEHSRNKSSD PLPSDNTTLV SDNPSTSAAD KFQEAPYKRA MNELPSMAIR TQEQVNLACH 660 GNQQVGIGVS MGSASNNVSL TLGLHQNHGI GLAEPFPLSA AQRFGLGLET NNEGYVLSGF 720 ESQNRHFGRD VIGGQLLHDF VG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 8e-16 | 527 | 584 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-16 | 527 | 584 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-16 | 527 | 585 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-16 | 527 | 585 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.BS40A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016183786.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A445AJI7 | 0.0 | A0A445AJI7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G25710.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2810 | 33 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-105 | TALE family protein |