PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BAN8Q
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 295aa    MW: 31151.4 Da    PI: 9.5549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BAN8QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08102127227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt++C+ f     Ck+Gd+C+FaHg+
  Araip.BAN8Q 102 KTRICNKFNSAEGCKFGDKCHFAHGE 127
                  89**********************96 PP
2zf-CCCH38.32.2e-12263287126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC +f++ G C +GdrC+FaHg
  Araip.BAN8Q 263 YKTKLCENFSK-GSCTFGDRCHFAHG 287
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
Gene3DG3DSA:4.10.1000.105.1E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-8100131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779100128IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4100127IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.21E-15160242IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-16169238IPR004088K Homology domain, type 1
SMARTSM003221.1E-12169239IPR004087K Homology domain
PROSITE profilePS5008415.158170234IPR004088K Homology domain, type 1
CDDcd001051.89E-15172235No hitNo description
PfamPF000135.3E-12172236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.9E-17259292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-9261292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868262289IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7262288IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTRKRGRPE FGFNVNGGLK KNKQELDSLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGYNAVAQ MMNLAPAAPQ ASRNIAAPPP PVPNGSAQSS VKTRICNKFN SAEGCKFGDK  120
CHFAHGEWEL GKPIAHFDDH RAMGPPPVGR MAGPGRMEPP PGPATSFGAN ATAKISVEAS  180
LAGAIIGKGG VNSKQICRQT GAKLSIREHE SDPNLRNIEL EGSFEQIKEA SNMVKELLLT  240
LQMSAPPKSN QGAPGSAAPG SNYKTKLCEN FSKGSCTFGD RCHFAHGAAE LRKGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BAN8Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969446.10.0zinc finger CCCH domain-containing protein 14
RefseqXP_016204924.10.0zinc finger CCCH domain-containing protein 14
RefseqXP_025604500.10.0zinc finger CCCH domain-containing protein 14
RefseqXP_025658696.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A444YH750.0A0A444YH75_ARAHY; Uncharacterized protein
TrEMBLA0A445CL620.0A0A445CL62_ARAHY; Uncharacterized protein
STRINGGLYMA19G32910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-97C3H family protein