PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B9TR5
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 468aa    MW: 53434.5 Da    PI: 8.5822
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B9TR5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.5e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a + ++  k  + w+++k++l+H+H+++p
  Araip.B9TR5  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISL---TEKTNSTAGLNCPAGIYIHTLKdVSAWMISKVVLDHSHPCCP 137
                  6****************98887..8889**************99887...8899999***********998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.889255291IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016266293IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDDSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDQFVLKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISLTEKTN STAGLNCPAG IYIHTLKDVS  120
AWMISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN KEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHFFFNK FITRNNSLIQ FVKQYDNCLG SREQAERESD AADFHMVIPC  240
VTKSSIEAYS IFNKFVVTYD SVAAEVKCQC LLFESRGILC HHALSVLSFE QVSQVSPRYI  300
LERWSKKVKR QHTHIKSSHD EPLLESRSKR FDQLVFRSQN ICEFASESEK LTAILYRAYD  360
NVMAEIESLK AKRKGTSSLS HEDANLESVN ELQSPPRIQT RGRPKNRLGS KLDKQIANAT  420
KKKKTKVLSE INLFDAASVV HSNSSQYQGH VMNYQFRVPA AGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B9TR5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-26far-red elongated hypocotyls 3